Complex 6o97
System information
| Experimental technique | X-ray |
| Experimental resolution | 2.75 |
| System mass | 4575.02 kDa |
| Deposition year | 2019 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Thermus |
| RCSB PDB Entry | 6o97 |
| Reference | Matsushita Takahiko, Sati Girish C., Kondasinghe Nuwan, Pirrone Michael G., Kato Takayuki, Waduge Prabuddha, Kumar Harshitha Santhosh, Sanchon Adrian Cortes, Dobosz-Bartoszek Malgorzata, Shcherbakov Dimitri, Juhas Mario, Hobbie Sven N., Schrepfer Thomas, Chow Christine S., Polikanov Yury S., Schacht Jochen, Vasella Andrea, Böttger Erik C., Crich David. . Design, Multigram Synthesis, and in Vitro and in Vivo Evaluation of Propylamycin: A Semisynthetic 4,5-Deoxystreptamine Class Aminoglycoside for the Treatment of Drug-Resistant Enterobacteriaceae and Other Gram-Negative Pathogens Journal of the American Chemical Society |
| Equivalence Class |
NR_all_65795.87,
NR_all_97519.80
BGSU version: 4.48 |
| Compound | LUJ |
| Residue | . / 4099 |
| Chain | OTA / 1A |
| Non-redundant | True |
| Interacting RNA chains | A/1A |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | A/1A: rRNA |
| RNA family global | rRNA |
| Volume | - |
| Hydrophobicity | - |
| Hydrophilicity | - |
| Buriedness | - |
| Don/acc character | - |
| SiteScore | - |
| D Score | - |
| Kd | — |
| Compound | LUJ |
| Residue | . / 4100 |
| Chain | PTA / 1A |
| Non-redundant | True |
| Interacting RNA chains | A/1A |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | A/1A: rRNA |
| RNA family global | rRNA |
| Volume | 263.08 Å3 |
| Hydrophobicity | 0.020 |
| Hydrophilicity | 1.519 |
| Buriedness | 0.595 |
| Don/acc character | 0.757 |
| SiteScore | 1.081 |
| D Score | 0.802 |
| Kd | — |
| Compound | LUJ |
| Residue | . / 1832 |
| Chain | DKB / 1a |
| Non-redundant | True |
| Interacting RNA chains | FA/1a |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | FA/1a: rRNA |
| RNA family global | rRNA |
| Volume | 374.21 Å3 |
| Hydrophobicity | 0.222 |
| Hydrophilicity | 1.297 |
| Buriedness | 0.713 |
| Don/acc character | 0.911 |
| SiteScore | 1.010 |
| D Score | 0.945 |
| Kd | — |
| Compound | LUJ |
| Residue | . / 3851 |
| Chain | QSC / 2A |
| Non-redundant | True |
| Interacting RNA chains | EB/2A |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | EB/2A: rRNA |
| RNA family global | rRNA |
| Volume | - |
| Hydrophobicity | - |
| Hydrophilicity | - |
| Buriedness | - |
| Don/acc character | - |
| SiteScore | - |
| D Score | - |
| Kd | — |
| Compound | LUJ |
| Residue | . / 3852 |
| Chain | RSC / 2A |
| Non-redundant | True |
| Interacting RNA chains | EB/2A |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | EB/2A: rRNA |
| RNA family global | rRNA |
| Volume | 271.31 Å3 |
| Hydrophobicity | 0.046 |
| Hydrophilicity | 1.374 |
| Buriedness | 0.611 |
| Don/acc character | 1.138 |
| SiteScore | 1.092 |
| D Score | 0.858 |
| Kd | — |
| Compound | LUJ |
| Residue | . / 3232 |
| Chain | WED / 2a |
| Non-redundant | True |
| Interacting RNA chains | JC/2a |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | JC/2a: rRNA |
| RNA family global | rRNA |
| Volume | 786.84 Å3 |
| Hydrophobicity | 0.044 |
| Hydrophilicity | 1.447 |
| Buriedness | 0.680 |
| Don/acc character | 1.160 |
| SiteScore | 0.988 |
| D Score | 0.876 |
| Kd | — |