HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 6nd5

System information

Experimental technique X-ray
Experimental resolution 2.60
System mass 4571.68 kDa
Deposition year 2018
Molecule type RNA/Protein
# RNA entities 6
Organism Thermus
RCSB PDB Entry 6nd5
Reference Svetlov Maxim S., Plessa Elena, Chen Chih-Wei, Bougas Anthony, Krokidis Marios G., Dinos George P., Polikanov Yury S.. . High-resolution crystal structures of ribosome-bound chloramphenicol and erythromycin provide the ultimate basis for their competition RNA

Compound CLM
Residue . / 4102
Chain RTA / 1A
Non-redundant True
Interacting RNA chains A/1A
Volume 701.43 Å3
Hydrophobicity 0.397
Hydrophilicity 1.207
Buriedness 0.797
Don/acc character 1.371
SiteScore 1.066
D Score 1.025

Compound CLM
Residue . / 3888
Chain KUC / 2A
Non-redundant True
Interacting RNA chains EB/2A
Volume 686.34 Å3
Hydrophobicity 0.299
Hydrophilicity 1.126
Buriedness 0.760
Don/acc character 1.344
SiteScore 1.041
D Score 1.029