Complex 6k32
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | Electron Microscopy |
| Experimental resolution | 3.20 |
| System mass | 883.38 kDa |
| Deposition year | 2019 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Cypovirus |
| RCSB PDB Entry | 6k32 |
| Reference | Li Xiaowu, Wang Li, Wang Xurong, Chen Wenyuan, Yang Tao, Song Jingdong, Liu Hongrong, Cheng Lingpeng. 2020. Structure of RdRps Within a Transcribing dsRNA Virus Provides Insights Into the Mechanisms of RNA Synthesis Journal of Molecular Biology |
| Equivalence Class |
NR_all_45323.2,
NR_all_81264.1
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | UTP |
| Residue | . / 1306 |
| Chain | O / A |
| Non-redundant | True |
| Interacting RNA chains | C/t, D/p |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | C/t: unknown, D/p: unknown |
| RNA family global | unknown |
| Volume | 486.37 Å3 |
| Hydrophobicity | 0.150 |
| Hydrophilicity | 1.646 |
| Buriedness | 0.875 |
| Don/acc character | 0.400 |
| SiteScore | 1.119 |
| D Score | 0.929 |
| Kd | — |