Complex 6jjh
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | X-ray |
| Experimental resolution | 1.74 |
| System mass | 6.05 kDa |
| Deposition year | 2019 |
| Molecule type | RNA |
| # RNA entities | 1 |
| Organism | Varicellovirus |
| RCSB PDB Entry | 6jjh |
| Reference | Zhang Yashu, El Omari Kamel, Duman Ramona, Liu Sisi, Haider Shozeb, Wagner Armin, Parkinson Gary N, Wei Dengguo. 2020. Native de novo structural determinations of non-canonical nucleic acid motifs by X-ray crystallography at long wavelengths Nucleic Acids Research |
| Equivalence Class |
NR_all_07071.1
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | POH |
| Residue | . / 101 |
| Chain | B / B |
| Non-redundant | True |
| Interacting RNA chains | A/B |
| RNA environment detailled | ion, other |
| RNA environment global | RNA/Other |
| RNA family chains | A/B: unknown |
| RNA family global | unknown |
| Volume | 133.08 Å3 |
| Hydrophobicity | 0.448 |
| Hydrophilicity | 0.666 |
| Buriedness | 0.475 |
| Don/acc character | 2.282 |
| SiteScore | 0.863 |
| D Score | 0.739 |
| Kd | — |
| Compound | POH |
| Residue | . / 102 |
| Chain | C / B |
| Non-redundant | True |
| Interacting RNA chains | A/B |
| RNA environment detailled | other |
| RNA environment global | RNA/Other |
| RNA family chains | A/B: unknown |
| RNA family global | unknown |
| Volume | 25.38 Å3 |
| Hydrophobicity | 0.000 |
| Hydrophilicity | 0.487 |
| Buriedness | 0.327 |
| Don/acc character | 2.082 |
| SiteScore | 0.595 |
| D Score | 0.447 |
| Kd | — |