HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 6i1l

System information

Experimental technique X-ray
Experimental resolution 2.98
System mass 344.86 kDa
Deposition year 2018
Molecule type RNA/DNA/Protein
# RNA entities 1
Organism N/A
RCSB PDB Entry 6i1l
Reference Swarts Daan C., Jinek Martin. . Mechanistic Insights into the cis- and trans-Acting DNase Activities of Cas12a Molecular Cell

Compound CIT
Residue . / 102
Chain T / B
Non-redundant True
Interacting RNA chains B/B
Volume 173.56 Å3
Hydrophobicity 0.418
Hydrophilicity 1.097
Buriedness 0.787
Don/acc character 0.688
SiteScore 0.741
D Score 0.646

Compound CIT
Residue . / 103
Chain U / B
Non-redundant True
Interacting RNA chains B/B
Volume 161.90 Å3
Hydrophobicity 0.093
Hydrophilicity 1.441
Buriedness 0.739
Don/acc character 1.120
SiteScore 0.689
D Score 0.480

Compound CIT
Residue . / 1405
Chain AA / D
Non-redundant False
Interacting RNA chains E/E
Volume 114.91 Å3
Hydrophobicity 0.170
Hydrophilicity 1.022
Buriedness 0.756
Don/acc character 0.711
SiteScore 0.620
D Score 0.519

Compound CIT
Residue . / 102
Chain IA / E
Non-redundant True
Interacting RNA chains E/E
Volume 381.42 Å3
Hydrophobicity 0.123
Hydrophilicity 1.269
Buriedness 0.788
Don/acc character 0.840
SiteScore 0.987
D Score 0.905

Compound CIT
Residue . / 103
Chain JA / E
Non-redundant True
Interacting RNA chains E/E
Volume 472.65 Å3
Hydrophobicity 0.476
Hydrophilicity 1.160
Buriedness 0.792
Don/acc character 0.798
SiteScore 1.063
D Score 1.037

Compound CIT
Residue . / 104
Chain KA / E
Non-redundant True
Interacting RNA chains E/E
Volume 146.80 Å3
Hydrophobicity 0.000
Hydrophilicity 0.882
Buriedness 0.605
Don/acc character 1.066
SiteScore 0.643
D Score 0.599