Complex 6i1l
System information
| Experimental technique | X-ray |
| Experimental resolution | 2.98 |
| System mass | 344.86 kDa |
| Deposition year | 2018 |
| Molecule type | RNA/DNA/Protein |
| # RNA entities | 1 |
| Organism | N/A |
| RCSB PDB Entry | 6i1l |
| Reference | Swarts Daan C., Jinek Martin. . Mechanistic Insights into the cis- and trans-Acting DNase Activities of Cas12a Molecular Cell |
| Equivalence Class |
NR_all_01336.2
BGSU version: 4.49 |
| Compound | CIT |
| Residue | . / 102 |
| Chain | T / B |
| Non-redundant | True |
| Interacting RNA chains | B/B |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | B/B: synthetic construct |
| RNA family global | synthetic construct |
| Volume | 173.56 Å3 |
| Hydrophobicity | 0.418 |
| Hydrophilicity | 1.097 |
| Buriedness | 0.787 |
| Don/acc character | 0.688 |
| SiteScore | 0.741 |
| D Score | 0.646 |
| Kd | — |
| Compound | CIT |
| Residue | . / 103 |
| Chain | U / B |
| Non-redundant | True |
| Interacting RNA chains | B/B |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | B/B: synthetic construct |
| RNA family global | synthetic construct |
| Volume | 161.90 Å3 |
| Hydrophobicity | 0.093 |
| Hydrophilicity | 1.441 |
| Buriedness | 0.739 |
| Don/acc character | 1.120 |
| SiteScore | 0.689 |
| D Score | 0.480 |
| Kd | — |
| Compound | CIT |
| Residue | . / 1405 |
| Chain | AA / D |
| Non-redundant | False |
| Interacting RNA chains | E/E |
| RNA environment detailled | protein, ion, other |
| RNA environment global | RNA/Other |
| RNA family chains | E/E: synthetic construct |
| RNA family global | synthetic construct |
| Volume | 114.91 Å3 |
| Hydrophobicity | 0.170 |
| Hydrophilicity | 1.022 |
| Buriedness | 0.756 |
| Don/acc character | 0.711 |
| SiteScore | 0.620 |
| D Score | 0.519 |
| Kd | — |
| Compound | CIT |
| Residue | . / 102 |
| Chain | IA / E |
| Non-redundant | True |
| Interacting RNA chains | E/E |
| RNA environment detailled | DNA, protein, ion, other |
| RNA environment global | RNA/Other |
| RNA family chains | E/E: synthetic construct |
| RNA family global | synthetic construct |
| Volume | 381.42 Å3 |
| Hydrophobicity | 0.123 |
| Hydrophilicity | 1.269 |
| Buriedness | 0.788 |
| Don/acc character | 0.840 |
| SiteScore | 0.987 |
| D Score | 0.905 |
| Kd | — |
| Compound | CIT |
| Residue | . / 103 |
| Chain | JA / E |
| Non-redundant | True |
| Interacting RNA chains | E/E |
| RNA environment detailled | protein, ion, other |
| RNA environment global | RNA/Other |
| RNA family chains | E/E: synthetic construct |
| RNA family global | synthetic construct |
| Volume | 472.65 Å3 |
| Hydrophobicity | 0.476 |
| Hydrophilicity | 1.160 |
| Buriedness | 0.792 |
| Don/acc character | 0.798 |
| SiteScore | 1.063 |
| D Score | 1.037 |
| Kd | — |
| Compound | CIT |
| Residue | . / 104 |
| Chain | KA / E |
| Non-redundant | True |
| Interacting RNA chains | E/E |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | E/E: synthetic construct |
| RNA family global | synthetic construct |
| Volume | 146.80 Å3 |
| Hydrophobicity | 0.000 |
| Hydrophilicity | 0.882 |
| Buriedness | 0.605 |
| Don/acc character | 1.066 |
| SiteScore | 0.643 |
| D Score | 0.599 |
| Kd | — |