Complex 6hiv
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | Electron Microscopy |
| Experimental resolution | 7.80 |
| System mass | 5396.18 kDa |
| Deposition year | 2018 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Trypanosoma |
| RCSB PDB Entry | 6hiv |
| Reference | Ramrath David J. F., Niemann Moritz, Leibundgut Marc, Bieri Philipp, Prange Céline, Horn Elke K., Leitner Alexander, Boehringer Daniel, Schneider André, Ban Nenad. 2018. Evolutionary shift toward protein-based architecture in trypanosomal mitochondrial ribosomes Science |
| Equivalence Class |
NR_all_60828.8
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | SPM |
| Residue | . / 738 |
| Chain | VG / CA |
| Non-redundant | True |
| Interacting RNA chains | EB/CA |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | EB/CA: rRNA |
| RNA family global | rRNA |
| Volume | - |
| Hydrophobicity | - |
| Hydrophilicity | - |
| Buriedness | - |
| Don/acc character | - |
| SiteScore | - |
| D Score | - |
| Kd | — |
| Compound | UTP |
| Residue | . / 401 |
| Chain | CF / DJ |
| Non-redundant | True |
| Interacting RNA chains | EB/CA |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | EB/CA: rRNA |
| RNA family global | rRNA |
| Volume | 272.69 Å3 |
| Hydrophobicity | 0.410 |
| Hydrophilicity | 1.204 |
| Buriedness | 0.707 |
| Don/acc character | 0.519 |
| SiteScore | 0.937 |
| D Score | 0.883 |
| Kd | — |