Complex 6dtd
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | X-ray |
| Experimental resolution | 1.65 |
| System mass | 148.29 kDa |
| Deposition year | 2018 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Segatella |
| RCSB PDB Entry | 6dtd |
| Reference | Slaymaker Ian M., Mesa Pablo, Kellner Max J., Kannan Soumya, Brignole Edward, Koob Jeremy, Feliciano Patricia R., Stella Stefano, Abudayyeh Omar O., Gootenberg Jonathan S., Strecker Jonathan, Montoya Guillermo, Zhang Feng. 2019. High-Resolution Structure of Cas13b and Biochemical Characterization of RNA Targeting and Cleavage Cell Reports |
| Equivalence Class |
NR_all_41425.1
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | CIT |
| Residue | . / 1205 |
| Chain | G / A |
| Non-redundant | True |
| Interacting RNA chains | B/C |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | B/C: unknown |
| RNA family global | unknown |
| Volume | - |
| Hydrophobicity | - |
| Hydrophilicity | - |
| Buriedness | - |
| Don/acc character | - |
| SiteScore | - |
| D Score | - |
| Kd | — |
| Compound | PG4 |
| Residue | . / 1210 |
| Chain | L / A |
| Non-redundant | True |
| Interacting RNA chains | B/C |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | B/C: unknown |
| RNA family global | unknown |
| Volume | 76.15 Å3 |
| Hydrophobicity | 0.392 |
| Hydrophilicity | 0.862 |
| Buriedness | 0.578 |
| Don/acc character | 0.106 |
| SiteScore | 0.595 |
| D Score | 0.545 |
| Kd | — |
| Compound | PG4 |
| Residue | . / 102 |
| Chain | O / C |
| Non-redundant | True |
| Interacting RNA chains | B/C |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | B/C: unknown |
| RNA family global | unknown |
| Volume | 276.80 Å3 |
| Hydrophobicity | 0.274 |
| Hydrophilicity | 0.899 |
| Buriedness | 0.686 |
| Don/acc character | 0.860 |
| SiteScore | 0.913 |
| D Score | 0.922 |
| Kd | — |