Complex 6dtd
System information
| Experimental technique | X-ray |
| Experimental resolution | 1.65 |
| System mass | 148.29 kDa |
| Deposition year | 2018 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Segatella |
| RCSB PDB Entry | 6dtd |
| Reference | Slaymaker Ian M., Mesa Pablo, Kellner Max J., Kannan Soumya, Brignole Edward, Koob Jeremy, Feliciano Patricia R., Stella Stefano, Abudayyeh Omar O., Gootenberg Jonathan S., Strecker Jonathan, Montoya Guillermo, Zhang Feng. . High-Resolution Structure of Cas13b and Biochemical Characterization of RNA Targeting and Cleavage Cell Reports |
| Equivalence Class |
NR_all_41425.1
BGSU version: 4.49 |
| Compound | CIT |
| Residue | . / 1205 |
| Chain | G / A |
| Non-redundant | True |
| Interacting RNA chains | B/C |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | B/C: unknown |
| RNA family global | unknown |
| Volume | - |
| Hydrophobicity | - |
| Hydrophilicity | - |
| Buriedness | - |
| Don/acc character | - |
| SiteScore | - |
| D Score | - |
| Kd | — |
| Compound | PG4 |
| Residue | . / 1210 |
| Chain | L / A |
| Non-redundant | True |
| Interacting RNA chains | B/C |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | B/C: unknown |
| RNA family global | unknown |
| Volume | 76.15 Å3 |
| Hydrophobicity | 0.392 |
| Hydrophilicity | 0.862 |
| Buriedness | 0.578 |
| Don/acc character | 0.106 |
| SiteScore | 0.595 |
| D Score | 0.545 |
| Kd | — |
| Compound | PG4 |
| Residue | . / 102 |
| Chain | O / C |
| Non-redundant | True |
| Interacting RNA chains | B/C |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | B/C: unknown |
| RNA family global | unknown |
| Volume | 276.80 Å3 |
| Hydrophobicity | 0.274 |
| Hydrophilicity | 0.899 |
| Buriedness | 0.686 |
| Don/acc character | 0.860 |
| SiteScore | 0.913 |
| D Score | 0.922 |
| Kd | — |