Complex 6boh
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | X-ray |
| Experimental resolution | 3.40 |
| System mass | 4622.55 kDa |
| Deposition year | 2017 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Thermus |
| RCSB PDB Entry | 6boh |
| Reference | Svidritskiy Egor, Korostelev Andrei A.. 2018. Conformational Control of Translation Termination on the 70S Ribosome Structure |
| Equivalence Class |
NR_all_35542.167,
NR_all_97519.80
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | BLS |
| Residue | . / 9001 |
| Chain | LK / B |
| Non-redundant | True |
| Interacting RNA chains | B/B, IA/IA |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | B/B: rRNA, IA/IA: tRNA |
| RNA family global | multiple |
| Volume | 681.54 Å3 |
| Hydrophobicity | 0.221 |
| Hydrophilicity | 0.979 |
| Buriedness | 0.685 |
| Don/acc character | 1.382 |
| SiteScore | 1.153 |
| D Score | 1.032 |
| Kd | — |
| Compound | BLS |
| Residue | . / 9001 |
| Chain | BNA / GB |
| Non-redundant | True |
| Interacting RNA chains | NC/NC, GB/GB |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | GB/GB: rRNA, NC/NC: tRNA |
| RNA family global | multiple |
| Volume | 188.31 Å3 |
| Hydrophobicity | 0.300 |
| Hydrophilicity | 1.634 |
| Buriedness | 0.804 |
| Don/acc character | 0.774 |
| SiteScore | 0.932 |
| D Score | 0.447 |
| Kd | — |