Complex 6bjy
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | X-ray |
| Experimental resolution | 3.46 |
| System mass | 254.92 kDa |
| Deposition year | 2017 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Vesiculovirus |
| RCSB PDB Entry | 6bjy |
| Reference | Gumpper Ryan H., Li Weike, Castañeda Carlos H., Scuderi M. José, Bashkin James K., Luo Ming. 2018. A Polyamide Inhibits Replication of Vesicular Stomatitis Virus by Targeting RNA in the Nucleocapsid Journal of Virology |
| Equivalence Class |
NR_all_75870.2
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | DV4 |
| Residue | . / 101 |
| Chain | G / R |
| Non-redundant | True |
| Interacting RNA chains | A/R |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | A/R: unknown |
| RNA family global | unknown |
| Volume | 575.90 Å3 |
| Hydrophobicity | 0.375 |
| Hydrophilicity | 1.242 |
| Buriedness | 0.800 |
| Don/acc character | 0.926 |
| SiteScore | 0.986 |
| D Score | 0.910 |
| Kd | — |