Complex 6b4v
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | X-ray |
| Experimental resolution | 3.40 |
| System mass | 4544.27 kDa |
| Deposition year | 2017 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Thermus |
| RCSB PDB Entry | 6b4v |
| Reference | Svidritskiy Egor, Korostelev Andrei A.. 2018. Mechanism of Inhibition of Translation Termination by Blasticidin S Journal of Molecular Biology |
| Equivalence Class |
NR_all_35542.167,
NR_all_97519.80
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | BLS |
| Residue | . / 9001 |
| Chain | OL / B |
| Non-redundant | True |
| Interacting RNA chains | B/B, IA/IA |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | B/B: rRNA, IA/IA: tRNA |
| RNA family global | multiple |
| Volume | 764.20 Å3 |
| Hydrophobicity | 0.110 |
| Hydrophilicity | 1.081 |
| Buriedness | 0.714 |
| Don/acc character | 1.548 |
| SiteScore | 1.160 |
| D Score | 1.016 |
| Kd | — |
| Compound | BLS |
| Residue | . / 9001 |
| Chain | YTA / FB |
| Non-redundant | True |
| Interacting RNA chains | MC/MC, FB/FB |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | FB/FB: rRNA, MC/MC: tRNA |
| RNA family global | multiple |
| Volume | 761.46 Å3 |
| Hydrophobicity | 0.198 |
| Hydrophilicity | 1.072 |
| Buriedness | 0.734 |
| Don/acc character | 1.407 |
| SiteScore | 1.047 |
| D Score | 1.031 |
| Kd | — |