Complex 5xog
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | X-ray |
| Experimental resolution | 3.00 |
| System mass | 556.72 kDa |
| Deposition year | 2017 |
| Molecule type | RNA/DNA/Protein |
| # RNA entities | 1 |
| Organism | N/A |
| RCSB PDB Entry | 5xog |
| Reference | Ehara Haruhiko, Yokoyama Takeshi, Shigematsu Hideki, Yokoyama Shigeyuki, Shirouzu Mikako, Sekine Shun-ichi. 2017. Structure of the complete elongation complex of RNA polymerase II with basal factors Science |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | APC |
| Residue | . / 1804 |
| Chain | U / A |
| Non-redundant | True |
| Interacting RNA chains | M/P |
| RNA environment detailled | DNA, protein, ion |
| RNA environment global | RNA/DNA/Protein |
| RNA family chains | M/P: synthetic construct |
| RNA family global | synthetic construct |
| Volume | 751.51 Å3 |
| Hydrophobicity | 0.793 |
| Hydrophilicity | 1.023 |
| Buriedness | 0.775 |
| Don/acc character | 1.117 |
| SiteScore | 1.055 |
| D Score | 1.072 |
| Kd | — |