Complex 5vp2
System information
Experimental technique | X-ray |
Experimental resolution | 2.80 |
System mass | 4571.58 kDa |
Deposition year | 2017 |
Molecule type | RNA/Protein |
# RNA entities | 6 |
Organism | Thermus |
RCSB PDB Entry | 5vp2 |
Reference | Osterman Ilya A., Khabibullina Nelli F., Komarova Ekaterina S., Kasatsky Pavel, Kartsev Victor G., Bogdanov Alexey A., Dontsova Olga A., Konevega Andrey L., Sergiev Petr V., Polikanov Yury S.. . Madumycin II inhibits peptide bond formation by forcing the peptidyl transferase center into an inactive state Nucleic Acids Research |
Compound | M2D |
Residue | . / 4118 |
Chain | HUA / 1A |
Non-redundant | True |
Interacting RNA chains | A/1A |
Volume | 1341.47 Å3 |
Hydrophobicity | 0.284 |
Hydrophilicity | 1.129 |
Buriedness | 0.758 |
Don/acc character | 1.772 |
SiteScore | 1.040 |
D Score | 1.027 |
Compound | M2D |
Residue | . / 3864 |
Chain | XTC / 2A |
Non-redundant | True |
Interacting RNA chains | EB/2A |
Volume | 1283.85 Å3 |
Hydrophobicity | 0.344 |
Hydrophilicity | 1.149 |
Buriedness | 0.772 |
Don/acc character | 2.423 |
SiteScore | 1.049 |
D Score | 1.029 |