Complex 5vp2
System information
| Experimental technique | X-ray |
| Experimental resolution | 2.80 |
| System mass | 4571.58 kDa |
| Deposition year | 2017 |
| Molecule type | RNA/Protein |
| # RNA entities | 6 |
| Organism | Thermus |
| RCSB PDB Entry | 5vp2 |
| Reference | Osterman Ilya A., Khabibullina Nelli F., Komarova Ekaterina S., Kasatsky Pavel, Kartsev Victor G., Bogdanov Alexey A., Dontsova Olga A., Konevega Andrey L., Sergiev Petr V., Polikanov Yury S.. . Madumycin II inhibits peptide bond formation by forcing the peptidyl transferase center into an inactive state Nucleic Acids Research |
| Compound | M2D |
| Residue | . / 4118 |
| Chain | HUA / 1A |
| Non-redundant | True |
| Interacting RNA chains | A/1A |
| Volume | 1341.47 Å3 |
| Hydrophobicity | 0.284 |
| Hydrophilicity | 1.129 |
| Buriedness | 0.758 |
| Don/acc character | 1.772 |
| SiteScore | 1.040 |
| D Score | 1.027 |
| Compound | M2D |
| Residue | . / 3864 |
| Chain | XTC / 2A |
| Non-redundant | True |
| Interacting RNA chains | EB/2A |
| Volume | 1283.85 Å3 |
| Hydrophobicity | 0.344 |
| Hydrophilicity | 1.149 |
| Buriedness | 0.772 |
| Don/acc character | 2.423 |
| SiteScore | 1.049 |
| D Score | 1.029 |