Complex 5umd
System information
| Experimental technique | Electron Microscopy |
| Experimental resolution | 3.20 |
| System mass | 2136.62 kDa |
| Deposition year | 2017 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Plasmodium |
| RCSB PDB Entry | 5umd |
| Reference | Wong Wilson, Bai Xiao-Chen, Sleebs Brad E., Triglia Tony, Brown Alan, Thompson Jennifer K., Jackson Katherine E., Hanssen Eric, Marapana Danushka S., Fernandez Israel S., Ralph Stuart A., Cowman Alan F., Scheres Sjors H. W., Baum Jake. . Mefloquine targets the Plasmodium falciparum 80S ribosome to inhibit protein synthesis Nature Microbiology |
| Equivalence Class |
NR_all_68933.3
BGSU version: 4.49 |
| Compound | YMZ |
| Residue | . / 3801 |
| Chain | TA / A |
| Non-redundant | True |
| Interacting RNA chains | A/A |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | A/A: rRNA |
| RNA family global | rRNA |
| Volume | 431.15 Å3 |
| Hydrophobicity | 0.665 |
| Hydrophilicity | 1.144 |
| Buriedness | 0.761 |
| Don/acc character | 0.711 |
| SiteScore | 1.024 |
| D Score | 1.000 |
| Kd | — |
| Compound | YMZ |
| Residue | . / 301 |
| Chain | BH / K |
| Non-redundant | True |
| Interacting RNA chains | A/A |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | A/A: rRNA |
| RNA family global | rRNA |
| Volume | 567.67 Å3 |
| Hydrophobicity | 0.492 |
| Hydrophilicity | 1.636 |
| Buriedness | 0.884 |
| Don/acc character | 0.599 |
| SiteScore | 1.124 |
| D Score | 0.937 |
| Kd | — |