HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 5onh

System information

Experimental technique X-ray
Experimental resolution 3.10
System mass 256.97 kDa
Deposition year 2017
Molecule type RNA/Protein
# RNA entities 1
Organism Escherichia
RCSB PDB Entry 5onh
Reference Dulic Morana, Cvetesic Nevena, Zivkovic Igor, Palencia Andrés, Cusack Stephen, Bertosa Branimir, Gruic-Sovulj Ita. . Kinetic Origin of Substrate Specificity in Post-Transfer Editing by Leucyl-tRNA Synthetase Journal of Molecular Biology
Equivalence Class NR_all_11709.4
BGSU version: 4.48

Compound LSS
Residue . / 901
Chain F / A
Non-redundant True
Interacting RNA chains B/B
RNA environment detailled protein
RNA environment global RNA/Protein
RNA family chains B/B: tRNA
RNA family global tRNA
Volume 418.46 Å3
Hydrophobicity 1.039
Hydrophilicity 1.273
Buriedness 0.915
Don/acc character 0.710
SiteScore 1.145
D Score 1.074
Kd

Compound LSS
Residue . / 901
Chain J / D
Non-redundant True
Interacting RNA chains D/E
RNA environment detailled protein
RNA environment global RNA/Protein
RNA family chains D/E: tRNA
RNA family global tRNA
Volume 459.96 Å3
Hydrophobicity 0.817
Hydrophilicity 1.237
Buriedness 0.880
Don/acc character 0.622
SiteScore 1.122
D Score 1.064
Kd