Complex 5omw
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | X-ray |
| Experimental resolution | 2.60 |
| System mass | 256.18 kDa |
| Deposition year | 2017 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Escherichia |
| RCSB PDB Entry | 5omw |
| Reference | Dulic Morana, Cvetesic Nevena, Zivkovic Igor, Palencia Andrés, Cusack Stephen, Bertosa Branimir, Gruic-Sovulj Ita. 2018. Kinetic Origin of Substrate Specificity in Post-Transfer Editing by Leucyl-tRNA Synthetase Journal of Molecular Biology |
| Equivalence Class |
NR_all_11709.5
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | LSS |
| Residue | . / 901 |
| Chain | F / A |
| Non-redundant | True |
| Interacting RNA chains | B/B |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | B/B: tRNA |
| RNA family global | tRNA |
| Volume | 404.05 Å3 |
| Hydrophobicity | 0.724 |
| Hydrophilicity | 1.353 |
| Buriedness | 0.912 |
| Don/acc character | 0.757 |
| SiteScore | 1.143 |
| D Score | 1.046 |
| Kd | — |
| Compound | LSS |
| Residue | . / 901 |
| Chain | I / D |
| Non-redundant | True |
| Interacting RNA chains | D/E |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | D/E: tRNA |
| RNA family global | tRNA |
| Volume | 467.51 Å3 |
| Hydrophobicity | 0.814 |
| Hydrophilicity | 1.225 |
| Buriedness | 0.893 |
| Don/acc character | 0.587 |
| SiteScore | 1.130 |
| D Score | 1.077 |
| Kd | — |