Complex 5obm
System information
| Experimental technique | X-ray |
| Experimental resolution | 3.40 |
| System mass | 6274.90 kDa |
| Deposition year | 2017 |
| Molecule type | RNA/Protein |
| # RNA entities | 3 |
| Organism | Saccharomyces |
| RCSB PDB Entry | 5obm |
| Reference | Prokhorova Irina, Altman Roger B., Djumagulov Muminjon, Shrestha Jaya P., Urzhumtsev Alexandre, Ferguson Angelica, Chang Cheng-Wei Tom, Yusupov Marat, Blanchard Scott C., Yusupova Gulnara. . Aminoglycoside interactions and impacts on the eukaryotic ribosome Proceedings of the National Academy of Sciences |
| Compound | LLL |
| Residue | . / 3995 |
| Chain | BCA / 1 |
| Non-redundant | True |
| Interacting RNA chains | A/1 |
| Volume | 187.96 Å3 |
| Hydrophobicity | 0.000 |
| Hydrophilicity | 1.754 |
| Buriedness | 0.693 |
| Don/acc character | 0.700 |
| SiteScore | 0.739 |
| D Score | 0.453 |
| Compound | LLL |
| Residue | . / 3997 |
| Chain | DCA / 1 |
| Non-redundant | True |
| Interacting RNA chains | A/1 |
| Volume | - |
| Hydrophobicity | - |
| Hydrophilicity | - |
| Buriedness | - |
| Don/acc character | - |
| SiteScore | - |
| D Score | - |
| Compound | LLL |
| Residue | . / 4003 |
| Chain | JCA / 1 |
| Non-redundant | True |
| Interacting RNA chains | A/1 |
| Volume | 437.32 Å3 |
| Hydrophobicity | 0.055 |
| Hydrophilicity | 1.164 |
| Buriedness | 0.738 |
| Don/acc character | 2.416 |
| SiteScore | 0.838 |
| D Score | 0.761 |
| Compound | LLL |
| Residue | . / 2044 |
| Chain | PMA / 2 |
| Non-redundant | True |
| Interacting RNA chains | SA/2 |
| Volume | 26.07 Å3 |
| Hydrophobicity | 0.188 |
| Hydrophilicity | 1.646 |
| Buriedness | 0.610 |
| Don/acc character | 0.732 |
| SiteScore | 0.510 |
| D Score | 0.217 |
| Compound | LLL |
| Residue | . / 4154 |
| Chain | GQB / 5 |
| Non-redundant | True |
| Interacting RNA chains | BC/5, DC/8 |
| Volume | 914.78 Å3 |
| Hydrophobicity | 0.132 |
| Hydrophilicity | 1.342 |
| Buriedness | 0.718 |
| Don/acc character | 2.089 |
| SiteScore | 1.013 |
| D Score | 0.933 |
| Compound | LLL |
| Residue | . / 4161 |
| Chain | NQB / 5 |
| Non-redundant | True |
| Interacting RNA chains | BC/5 |
| Volume | 42.19 Å3 |
| Hydrophobicity | 0.117 |
| Hydrophilicity | 0.822 |
| Buriedness | 0.549 |
| Don/acc character | 2.270 |
| SiteScore | 0.493 |
| D Score | 0.426 |
| Compound | LLL |
| Residue | . / 4163 |
| Chain | PQB / 5 |
| Non-redundant | True |
| Interacting RNA chains | BC/5 |
| Volume | 201.34 Å3 |
| Hydrophobicity | 0.008 |
| Hydrophilicity | 1.569 |
| Buriedness | 0.678 |
| Don/acc character | 1.191 |
| SiteScore | 0.762 |
| D Score | 0.547 |
| Compound | LLL |
| Residue | . / 4166 |
| Chain | SQB / 5 |
| Non-redundant | True |
| Interacting RNA chains | BC/5 |
| Volume | 231.87 Å3 |
| Hydrophobicity | 0.240 |
| Hydrophilicity | 1.035 |
| Buriedness | 0.708 |
| Don/acc character | 3.194 |
| SiteScore | 0.714 |
| D Score | 0.651 |
| Compound | LLL |
| Residue | . / 4170 |
| Chain | WQB / 5 |
| Non-redundant | True |
| Interacting RNA chains | BC/5 |
| Volume | 602.31 Å3 |
| Hydrophobicity | 0.111 |
| Hydrophilicity | 0.955 |
| Buriedness | 0.654 |
| Don/acc character | 2.806 |
| SiteScore | 0.987 |
| D Score | 1.021 |
| Compound | LLL |
| Residue | . / 4175 |
| Chain | BRB / 5 |
| Non-redundant | True |
| Interacting RNA chains | BC/5 |
| Volume | 1557.22 Å3 |
| Hydrophobicity | 0.067 |
| Hydrophilicity | 1.387 |
| Buriedness | 0.739 |
| Don/acc character | 2.978 |
| SiteScore | 1.028 |
| D Score | 0.931 |
| Compound | LLL |
| Residue | . / 4177 |
| Chain | DRB / 5 |
| Non-redundant | True |
| Interacting RNA chains | BC/5 |
| Volume | 923.70 Å3 |
| Hydrophobicity | 0.047 |
| Hydrophilicity | 1.332 |
| Buriedness | 0.726 |
| Don/acc character | 2.031 |
| SiteScore | 1.019 |
| D Score | 0.941 |
| Compound | LLL |
| Residue | . / 2170 |
| Chain | GIC / 6 |
| Non-redundant | True |
| Interacting RNA chains | WD/6 |
| Volume | 690.80 Å3 |
| Hydrophobicity | 0.095 |
| Hydrophilicity | 1.136 |
| Buriedness | 0.699 |
| Don/acc character | 1.519 |
| SiteScore | 1.001 |
| D Score | 0.989 |
| Compound | LLL |
| Residue | . / 2171 |
| Chain | HIC / 6 |
| Non-redundant | False |
| Interacting RNA chains | WD/6 |
| Volume | 148.18 Å3 |
| Hydrophobicity | 0.103 |
| Hydrophilicity | 1.035 |
| Buriedness | 0.670 |
| Don/acc character | 1.749 |
| SiteScore | 0.585 |
| D Score | 0.495 |
| Compound | LLL |
| Residue | . / 2172 |
| Chain | IIC / 6 |
| Non-redundant | True |
| Interacting RNA chains | WD/6 |
| Volume | 554.29 Å3 |
| Hydrophobicity | 0.396 |
| Hydrophilicity | 0.946 |
| Buriedness | 0.709 |
| Don/acc character | 1.593 |
| SiteScore | 1.022 |
| D Score | 1.052 |