Complex 5obm
System information
| Experimental technique | X-ray |
| Experimental resolution | 3.40 |
| System mass | 6274.90 kDa |
| Deposition year | 2017 |
| Molecule type | RNA/Protein |
| # RNA entities | 3 |
| Organism | Saccharomyces |
| RCSB PDB Entry | 5obm |
| Reference | Prokhorova Irina, Altman Roger B., Djumagulov Muminjon, Shrestha Jaya P., Urzhumtsev Alexandre, Ferguson Angelica, Chang Cheng-Wei Tom, Yusupov Marat, Blanchard Scott C., Yusupova Gulnara. . Aminoglycoside interactions and impacts on the eukaryotic ribosome Proceedings of the National Academy of Sciences |
| Compound | LLL |
| Residue | . / 3995 |
| Chain | BCA / 1 |
| Non-redundant | True |
| Interacting RNA chains | A/1 |
| Volume | 180.07 Å3 |
| Hydrophobicity | 0.109 |
| Hydrophilicity | 1.626 |
| Buriedness | 0.698 |
| Don/acc character | 0.537 |
| SiteScore | 0.719 |
| D Score | 0.468 |
| Compound | LLL |
| Residue | . / 3997 |
| Chain | DCA / 1 |
| Non-redundant | True |
| Interacting RNA chains | A/1 |
| Volume | - |
| Hydrophobicity | - |
| Hydrophilicity | - |
| Buriedness | - |
| Don/acc character | - |
| SiteScore | - |
| D Score | - |
| Compound | LLL |
| Residue | . / 4003 |
| Chain | JCA / 1 |
| Non-redundant | True |
| Interacting RNA chains | A/1 |
| Volume | 416.74 Å3 |
| Hydrophobicity | 0.101 |
| Hydrophilicity | 1.443 |
| Buriedness | 0.739 |
| Don/acc character | 1.121 |
| SiteScore | 0.916 |
| D Score | 0.770 |
| Compound | LLL |
| Residue | . / 2044 |
| Chain | PMA / 2 |
| Non-redundant | True |
| Interacting RNA chains | SA/2 |
| Volume | 25.72 Å3 |
| Hydrophobicity | 0.228 |
| Hydrophilicity | 1.296 |
| Buriedness | 0.612 |
| Don/acc character | 0.634 |
| SiteScore | 0.473 |
| D Score | 0.283 |
| Compound | LLL |
| Residue | . / 4154 |
| Chain | GQB / 5 |
| Non-redundant | True |
| Interacting RNA chains | DC/8, BC/5 |
| Volume | 879.45 Å3 |
| Hydrophobicity | 0.197 |
| Hydrophilicity | 1.321 |
| Buriedness | 0.727 |
| Don/acc character | 0.736 |
| SiteScore | 1.020 |
| D Score | 0.946 |
| Compound | LLL |
| Residue | . / 4161 |
| Chain | NQB / 5 |
| Non-redundant | True |
| Interacting RNA chains | BC/5 |
| Volume | 43.22 Å3 |
| Hydrophobicity | 0.222 |
| Hydrophilicity | 0.589 |
| Buriedness | 0.549 |
| Don/acc character | 4.698 |
| SiteScore | 0.538 |
| D Score | 0.501 |
| Compound | LLL |
| Residue | . / 4163 |
| Chain | PQB / 5 |
| Non-redundant | True |
| Interacting RNA chains | BC/5 |
| Volume | 191.05 Å3 |
| Hydrophobicity | 0.142 |
| Hydrophilicity | 1.405 |
| Buriedness | 0.681 |
| Don/acc character | 0.985 |
| SiteScore | 0.768 |
| D Score | 0.608 |
| Compound | LLL |
| Residue | . / 4166 |
| Chain | SQB / 5 |
| Non-redundant | True |
| Interacting RNA chains | BC/5 |
| Volume | 185.91 Å3 |
| Hydrophobicity | 0.856 |
| Hydrophilicity | 0.733 |
| Buriedness | 0.738 |
| Don/acc character | 1.609 |
| SiteScore | 0.697 |
| D Score | 0.645 |
| Compound | LLL |
| Residue | . / 4170 |
| Chain | WQB / 5 |
| Non-redundant | True |
| Interacting RNA chains | BC/5 |
| Volume | 440.75 Å3 |
| Hydrophobicity | 0.488 |
| Hydrophilicity | 0.898 |
| Buriedness | 0.700 |
| Don/acc character | 1.029 |
| SiteScore | 1.029 |
| D Score | 1.067 |
| Compound | LLL |
| Residue | . / 4175 |
| Chain | BRB / 5 |
| Non-redundant | True |
| Interacting RNA chains | BC/5 |
| Volume | 1518.46 Å3 |
| Hydrophobicity | 0.279 |
| Hydrophilicity | 1.243 |
| Buriedness | 0.739 |
| Don/acc character | 0.938 |
| SiteScore | 1.028 |
| D Score | 0.979 |
| Compound | LLL |
| Residue | . / 4177 |
| Chain | DRB / 5 |
| Non-redundant | True |
| Interacting RNA chains | BC/5 |
| Volume | 882.88 Å3 |
| Hydrophobicity | 0.344 |
| Hydrophilicity | 1.239 |
| Buriedness | 0.741 |
| Don/acc character | 1.253 |
| SiteScore | 1.029 |
| D Score | 0.980 |
| Compound | LLL |
| Residue | . / 2170 |
| Chain | GIC / 6 |
| Non-redundant | True |
| Interacting RNA chains | WD/6 |
| Volume | 660.62 Å3 |
| Hydrophobicity | 0.169 |
| Hydrophilicity | 1.076 |
| Buriedness | 0.702 |
| Don/acc character | 0.887 |
| SiteScore | 1.003 |
| D Score | 1.010 |
| Compound | LLL |
| Residue | . / 2171 |
| Chain | HIC / 6 |
| Non-redundant | False |
| Interacting RNA chains | WD/6 |
| Volume | 119.36 Å3 |
| Hydrophobicity | 0.281 |
| Hydrophilicity | 1.312 |
| Buriedness | 0.694 |
| Don/acc character | 1.611 |
| SiteScore | 0.575 |
| D Score | 0.388 |
| Compound | LLL |
| Residue | . / 2172 |
| Chain | IIC / 6 |
| Non-redundant | True |
| Interacting RNA chains | WD/6 |
| Volume | 550.51 Å3 |
| Hydrophobicity | 0.486 |
| Hydrophilicity | 0.876 |
| Buriedness | 0.709 |
| Don/acc character | 1.230 |
| SiteScore | 1.032 |
| D Score | 1.070 |