Complex 5ndw
System information
| Experimental technique | X-ray |
| Experimental resolution | 3.70 |
| System mass | 6188.11 kDa |
| Deposition year | 2017 |
| Molecule type | RNA/Protein |
| # RNA entities | 3 |
| Organism | Saccharomyces |
| RCSB PDB Entry | 5ndw |
| Reference | Prokhorova Irina, Altman Roger B., Djumagulov Muminjon, Shrestha Jaya P., Urzhumtsev Alexandre, Ferguson Angelica, Chang Cheng-Wei Tom, Yusupov Marat, Blanchard Scott C., Yusupova Gulnara. . Aminoglycoside interactions and impacts on the eukaryotic ribosome Proceedings of the National Academy of Sciences |
| Compound | 8UZ |
| Residue | . / 3887 |
| Chain | UX / 1 |
| Non-redundant | True |
| Interacting RNA chains | A/1 |
| Volume | 118.33 Å3 |
| Hydrophobicity | 0.053 |
| Hydrophilicity | 1.182 |
| Buriedness | 0.674 |
| Don/acc character | 2.939 |
| SiteScore | 0.505 |
| D Score | 0.344 |
| Compound | 8UZ |
| Residue | . / 3888 |
| Chain | VX / 1 |
| Non-redundant | True |
| Interacting RNA chains | A/1 |
| Volume | 39.44 Å3 |
| Hydrophobicity | 0.000 |
| Hydrophilicity | 1.061 |
| Buriedness | 0.624 |
| Don/acc character | 0.721 |
| SiteScore | 0.425 |
| D Score | 0.294 |
| Compound | 8UZ |
| Residue | . / 3889 |
| Chain | WX / 1 |
| Non-redundant | True |
| Interacting RNA chains | A/1 |
| Volume | 124.85 Å3 |
| Hydrophobicity | 0.672 |
| Hydrophilicity | 1.108 |
| Buriedness | 0.743 |
| Don/acc character | 0.298 |
| SiteScore | 0.778 |
| D Score | 0.701 |
| Compound | 8UZ |
| Residue | . / 3893 |
| Chain | AY / 1 |
| Non-redundant | True |
| Interacting RNA chains | A/1 |
| Volume | 382.44 Å3 |
| Hydrophobicity | 0.014 |
| Hydrophilicity | 1.304 |
| Buriedness | 0.717 |
| Don/acc character | 0.701 |
| SiteScore | 0.931 |
| D Score | 0.840 |
| Compound | 8UZ |
| Residue | . / 3894 |
| Chain | BY / 1 |
| Non-redundant | True |
| Interacting RNA chains | A/1 |
| Volume | 448.64 Å3 |
| Hydrophobicity | 0.250 |
| Hydrophilicity | 1.102 |
| Buriedness | 0.721 |
| Don/acc character | 0.992 |
| SiteScore | 1.012 |
| D Score | 1.009 |
| Compound | 8UZ |
| Residue | . / 2029 |
| Chain | BDA / 2 |
| Non-redundant | True |
| Interacting RNA chains | B/2 |
| Volume | 508.33 Å3 |
| Hydrophobicity | 0.105 |
| Hydrophilicity | 1.264 |
| Buriedness | 0.709 |
| Don/acc character | 0.656 |
| SiteScore | 1.007 |
| D Score | 0.953 |
| Compound | 8UZ |
| Residue | . / 2031 |
| Chain | DDA / 2 |
| Non-redundant | True |
| Interacting RNA chains | B/2 |
| Volume | 198.94 Å3 |
| Hydrophobicity | 0.523 |
| Hydrophilicity | 1.107 |
| Buriedness | 0.752 |
| Don/acc character | 0.514 |
| SiteScore | 0.662 |
| D Score | 0.551 |
| Compound | 8UZ |
| Residue | . / 220 |
| Chain | LEA / 4 |
| Non-redundant | True |
| Interacting RNA chains | D/4, A/1 |
| Volume | 682.91 Å3 |
| Hydrophobicity | 0.118 |
| Hydrophilicity | 1.340 |
| Buriedness | 0.700 |
| Don/acc character | 0.775 |
| SiteScore | 1.001 |
| D Score | 0.923 |
| Compound | 8UZ |
| Residue | . / 3851 |
| Chain | UVA / 5 |
| Non-redundant | True |
| Interacting RNA chains | E/5 |
| Volume | 257.94 Å3 |
| Hydrophobicity | 0.171 |
| Hydrophilicity | 1.070 |
| Buriedness | 0.685 |
| Don/acc character | 1.011 |
| SiteScore | 0.787 |
| D Score | 0.740 |
| Compound | 8UZ |
| Residue | . / 3855 |
| Chain | YVA / 5 |
| Non-redundant | True |
| Interacting RNA chains | E/5 |
| Volume | 308.01 Å3 |
| Hydrophobicity | 0.245 |
| Hydrophilicity | 1.153 |
| Buriedness | 0.693 |
| Don/acc character | 1.832 |
| SiteScore | 0.807 |
| D Score | 0.737 |
| Compound | 8UZ |
| Residue | . / 3857 |
| Chain | AWA / 5 |
| Non-redundant | True |
| Interacting RNA chains | E/5 |
| Volume | 48.02 Å3 |
| Hydrophobicity | 0.282 |
| Hydrophilicity | 0.975 |
| Buriedness | 0.578 |
| Don/acc character | 1.826 |
| SiteScore | 0.502 |
| D Score | 0.417 |