Complex 5ndk
System information
| Experimental technique | X-ray |
| Experimental resolution | 2.95 |
| System mass | 4521.81 kDa |
| Deposition year | 2017 |
| Molecule type | RNA/Protein |
| # RNA entities | 5 |
| Organism | Thermus |
| RCSB PDB Entry | 5ndk |
| Reference | Prokhorova Irina, Altman Roger B., Djumagulov Muminjon, Shrestha Jaya P., Urzhumtsev Alexandre, Ferguson Angelica, Chang Cheng-Wei Tom, Yusupov Marat, Blanchard Scott C., Yusupova Gulnara. . Aminoglycoside interactions and impacts on the eukaryotic ribosome Proceedings of the National Academy of Sciences |
| Compound | 8UZ |
| Residue | . / 2201 |
| Chain | ED / 13 |
| Non-redundant | False |
| Interacting RNA chains | A/13 |
| Volume | 273.37 Å3 |
| Hydrophobicity | 0.201 |
| Hydrophilicity | 1.180 |
| Buriedness | 0.701 |
| Don/acc character | 1.980 |
| SiteScore | 0.957 |
| D Score | 0.918 |
| Compound | 8UZ |
| Residue | . / 2201 |
| Chain | OK / 1G |
| Non-redundant | True |
| Interacting RNA chains | J/1G |
| Volume | 252.79 Å3 |
| Hydrophobicity | 0.101 |
| Hydrophilicity | 1.160 |
| Buriedness | 0.687 |
| Don/acc character | 2.653 |
| SiteScore | 0.846 |
| D Score | 0.786 |