Complex 5ndk
System information
| Experimental technique | X-ray |
| Experimental resolution | 2.95 |
| System mass | 4521.81 |
| Deposition year | 2017 |
| Molecule type | RNA/protein |
| # RNA entities | 5 |
| Organism | Thermus |
| RCSB PDB Entry | 5ndk |
| Reference | Prokhorova Irina, Altman Roger B., Djumagulov Muminjon, Shrestha Jaya P., Urzhumtsev Alexandre, Ferguson Angelica, Chang Cheng-Wei Tom, Yusupov Marat, Blanchard Scott C., Yusupova Gulnara. . Aminoglycoside interactions and impacts on the eukaryotic ribosome Proceedings of the National Academy of Sciences |
Pocket 8UZ_.:ED/2201:13
| Compound | 8UZ |
| Non-redundant | False |
| Interacting RNA chains | A/13 |
| Volume | 267.54 |
| Hydrophobicity | 0.204 |
| Hydrophilicity | 1.031 |
| Buriedness | 0.703 |
| Don/acc character | 0.984 |
| SiteScore | 0.868 |
| D Score | 0.849 |
Pocket 8UZ_.:OK/2201:1G
| Compound | 8UZ |
| Non-redundant | True |
| Interacting RNA chains | J/1G |
| Volume | 240.44 |
| Hydrophobicity | 0.126 |
| Hydrophilicity | 1.096 |
| Buriedness | 0.695 |
| Don/acc character | 1.073 |
| SiteScore | 0.804 |
| D Score | 0.751 |