Complex 5ndk
System information
Experimental technique | X-ray |
Experimental resolution | 2.95 |
System mass | 4521.81 kDa |
Deposition year | 2017 |
Molecule type | RNA/Protein |
# RNA entities | 5 |
Organism | Thermus |
RCSB PDB Entry | 5ndk |
Reference | Prokhorova Irina, Altman Roger B., Djumagulov Muminjon, Shrestha Jaya P., Urzhumtsev Alexandre, Ferguson Angelica, Chang Cheng-Wei Tom, Yusupov Marat, Blanchard Scott C., Yusupova Gulnara. . Aminoglycoside interactions and impacts on the eukaryotic ribosome Proceedings of the National Academy of Sciences |
Compound | 8UZ |
Residue | . / 2201 |
Chain | ED / 13 |
Non-redundant | False |
Interacting RNA chains | A/13 |
Volume | 273.37 Å3 |
Hydrophobicity | 0.201 |
Hydrophilicity | 1.180 |
Buriedness | 0.701 |
Don/acc character | 1.980 |
SiteScore | 0.957 |
D Score | 0.918 |
Compound | 8UZ |
Residue | . / 2201 |
Chain | OK / 1G |
Non-redundant | True |
Interacting RNA chains | J/1G |
Volume | 252.79 Å3 |
Hydrophobicity | 0.101 |
Hydrophilicity | 1.160 |
Buriedness | 0.687 |
Don/acc character | 2.653 |
SiteScore | 0.846 |
D Score | 0.786 |