Complex 5ndg
System information
| Experimental technique | X-ray |
| Experimental resolution | 3.70 |
| System mass | 6233.17 kDa |
| Deposition year | 2017 |
| Molecule type | RNA/Protein |
| # RNA entities | 3 |
| Organism | Saccharomyces |
| RCSB PDB Entry | 5ndg |
| Reference | Prokhorova Irina, Altman Roger B., Djumagulov Muminjon, Shrestha Jaya P., Urzhumtsev Alexandre, Ferguson Angelica, Chang Cheng-Wei Tom, Yusupov Marat, Blanchard Scott C., Yusupova Gulnara. . Aminoglycoside interactions and impacts on the eukaryotic ribosome Proceedings of the National Academy of Sciences |
| Compound | GET |
| Residue | . / 2012 |
| Chain | KJ / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | - |
| Hydrophobicity | - |
| Hydrophilicity | - |
| Buriedness | - |
| Don/acc character | - |
| SiteScore | - |
| D Score | - |
| Compound | GET |
| Residue | . / 3810 |
| Chain | UZ / 1 |
| Non-redundant | True |
| Interacting RNA chains | JA/1, LA/4 |
| Volume | 634.89 Å3 |
| Hydrophobicity | 0.236 |
| Hydrophilicity | 0.967 |
| Buriedness | 0.686 |
| Don/acc character | 0.964 |
| SiteScore | 1.007 |
| D Score | 1.037 |
| Compound | GET |
| Residue | . / 2014 |
| Chain | DHA / 6 |
| Non-redundant | True |
| Interacting RNA chains | BC/6 |
| Volume | 136.51 Å3 |
| Hydrophobicity | 0.480 |
| Hydrophilicity | 1.361 |
| Buriedness | 0.700 |
| Don/acc character | 2.478 |
| SiteScore | 0.604 |
| D Score | 0.407 |
| Compound | GET |
| Residue | . / 3851 |
| Chain | XYA / 5 |
| Non-redundant | True |
| Interacting RNA chains | KD/5 |
| Volume | 172.19 Å3 |
| Hydrophobicity | 0.099 |
| Hydrophilicity | 1.214 |
| Buriedness | 0.628 |
| Don/acc character | 2.240 |
| SiteScore | 0.712 |
| D Score | 0.612 |