Complex 5ndg
System information
Experimental technique | X-ray |
Experimental resolution | 3.70 |
System mass | 6233.17 kDa |
Deposition year | 2017 |
Molecule type | RNA/Protein |
# RNA entities | 3 |
Organism | Saccharomyces |
RCSB PDB Entry | 5ndg |
Reference | Prokhorova Irina, Altman Roger B., Djumagulov Muminjon, Shrestha Jaya P., Urzhumtsev Alexandre, Ferguson Angelica, Chang Cheng-Wei Tom, Yusupov Marat, Blanchard Scott C., Yusupova Gulnara. . Aminoglycoside interactions and impacts on the eukaryotic ribosome Proceedings of the National Academy of Sciences |
Compound | GET |
Residue | . / 2012 |
Chain | KJ / 2 |
Non-redundant | True |
Interacting RNA chains | A/2 |
Volume | - |
Hydrophobicity | - |
Hydrophilicity | - |
Buriedness | - |
Don/acc character | - |
SiteScore | - |
D Score | - |
Compound | GET |
Residue | . / 3810 |
Chain | UZ / 1 |
Non-redundant | True |
Interacting RNA chains | LA/4, JA/1 |
Volume | 686.34 Å3 |
Hydrophobicity | 0.166 |
Hydrophilicity | 0.997 |
Buriedness | 0.687 |
Don/acc character | 2.585 |
SiteScore | 1.001 |
D Score | 1.027 |
Compound | GET |
Residue | . / 2014 |
Chain | DHA / 6 |
Non-redundant | True |
Interacting RNA chains | BC/6 |
Volume | 140.97 Å3 |
Hydrophobicity | 0.050 |
Hydrophilicity | 1.229 |
Buriedness | 0.695 |
Don/acc character | 1.424 |
SiteScore | 0.567 |
D Score | 0.404 |
Compound | GET |
Residue | . / 3851 |
Chain | XYA / 5 |
Non-redundant | True |
Interacting RNA chains | KD/5 |
Volume | 179.73 Å3 |
Hydrophobicity | 0.016 |
Hydrophilicity | 0.913 |
Buriedness | 0.609 |
Don/acc character | 3.662 |
SiteScore | 0.647 |
D Score | 0.600 |