Complex 5jc9
System information
| Experimental technique | X-ray |
| Experimental resolution | 3.03 |
| System mass | 4271.01 kDa |
| Deposition year | 2016 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Escherichia |
| RCSB PDB Entry | 5jc9 |
| Reference | Cocozaki Alexis I., Altman Roger B., Huang Jian, Buurman Ed T., Kazmirski Steven L., Doig Peter, Prince D. Bryan, Blanchard Scott C., Cate Jamie H. D., Ferguson Andrew D.. . Resistance mutations generate divergent antibiotic susceptibility profiles against translation inhibitors Proceedings of the National Academy of Sciences |
| Equivalence Class |
NR_all_56726.171,
NR_all_83717.186
BGSU version: 4.49 |
| Compound | 1PE |
| Residue | . / 3188 |
| Chain | OW / DA |
| Non-redundant | True |
| Interacting RNA chains | AD/DA |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | AD/DA: rRNA |
| RNA family global | rRNA |
| Volume | 87.81 Å3 |
| Hydrophobicity | 0.009 |
| Hydrophilicity | 1.175 |
| Buriedness | 0.594 |
| Don/acc character | 1.279 |
| SiteScore | 0.672 |
| D Score | 0.582 |
| Kd | — |
| Compound | 1PE |
| Residue | . / 3205 |
| Chain | FX / DA |
| Non-redundant | True |
| Interacting RNA chains | AD/DA |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | AD/DA: rRNA |
| RNA family global | rRNA |
| Volume | 343.00 Å3 |
| Hydrophobicity | 0.366 |
| Hydrophilicity | 0.906 |
| Buriedness | 0.706 |
| Don/acc character | 3.038 |
| SiteScore | 1.030 |
| D Score | 0.874 |
| Kd | — |
| Compound | PG4 |
| Residue | . / 1670 |
| Chain | SF / AA |
| Non-redundant | False |
| Interacting RNA chains | A/AA |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | A/AA: rRNA |
| RNA family global | rRNA |
| Volume | - |
| Hydrophobicity | - |
| Hydrophilicity | - |
| Buriedness | - |
| Don/acc character | - |
| SiteScore | - |
| D Score | - |
| Kd | — |
| Compound | PG4 |
| Residue | . / 1642 |
| Chain | TH / BA |
| Non-redundant | True |
| Interacting RNA chains | BA/BA |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | BA/BA: rRNA |
| RNA family global | rRNA |
| Volume | 53.85 Å3 |
| Hydrophobicity | 0.013 |
| Hydrophilicity | 0.597 |
| Buriedness | 0.476 |
| Don/acc character | 4.260 |
| SiteScore | 1.087 |
| D Score | 1.031 |
| Kd | — |
| Compound | PG4 |
| Residue | . / 202 |
| Chain | UO / DS |
| Non-redundant | True |
| Interacting RNA chains | AD/DA |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | AD/DA: rRNA |
| RNA family global | rRNA |
| Volume | - |
| Hydrophobicity | - |
| Hydrophilicity | - |
| Buriedness | - |
| Don/acc character | - |
| SiteScore | - |
| D Score | - |
| Kd | — |
| Compound | PG4 |
| Residue | . / 3196 |
| Chain | WW / DA |
| Non-redundant | True |
| Interacting RNA chains | AD/DA |
| RNA environment detailled | protein, other |
| RNA environment global | RNA/Other |
| RNA family chains | AD/DA: rRNA |
| RNA family global | rRNA |
| Volume | 162.58 Å3 |
| Hydrophobicity | 0.343 |
| Hydrophilicity | 0.859 |
| Buriedness | 0.621 |
| Don/acc character | 0.778 |
| SiteScore | 0.978 |
| D Score | 0.833 |
| Kd | — |
| Compound | PG4 |
| Residue | . / 3218 |
| Chain | SX / DA |
| Non-redundant | True |
| Interacting RNA chains | AD/DA |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | AD/DA: rRNA |
| RNA family global | rRNA |
| Volume | 174.59 Å3 |
| Hydrophobicity | 0.380 |
| Hydrophilicity | 0.839 |
| Buriedness | 0.656 |
| Don/acc character | 0.807 |
| SiteScore | 0.849 |
| D Score | 0.660 |
| Kd | — |