Complex 5j88
System information
| Experimental technique | X-ray |
| Experimental resolution | 3.32 |
| System mass | 4276.43 kDa |
| Deposition year | 2016 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Escherichia |
| RCSB PDB Entry | 5j88 |
| Reference | Cocozaki Alexis I., Altman Roger B., Huang Jian, Buurman Ed T., Kazmirski Steven L., Doig Peter, Prince D. Bryan, Blanchard Scott C., Cate Jamie H. D., Ferguson Andrew D.. . Resistance mutations generate divergent antibiotic susceptibility profiles against translation inhibitors Proceedings of the National Academy of Sciences |
| Equivalence Class |
NR_all_56726.171,
NR_all_83717.186
BGSU version: 4.49 |
| Compound | 1PE |
| Residue | . / 3185 |
| Chain | JW / DA |
| Non-redundant | True |
| Interacting RNA chains | AD/DA |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | AD/DA: rRNA |
| RNA family global | rRNA |
| Volume | 97.76 Å3 |
| Hydrophobicity | 0.103 |
| Hydrophilicity | 1.323 |
| Buriedness | 0.637 |
| Don/acc character | 1.391 |
| SiteScore | 0.701 |
| D Score | 0.560 |
| Kd | — |
| Compound | 1PE |
| Residue | . / 3203 |
| Chain | BX / DA |
| Non-redundant | True |
| Interacting RNA chains | AD/DA |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | AD/DA: rRNA |
| RNA family global | rRNA |
| Volume | 235.98 Å3 |
| Hydrophobicity | 0.411 |
| Hydrophilicity | 0.841 |
| Buriedness | 0.687 |
| Don/acc character | 4.072 |
| SiteScore | 1.052 |
| D Score | 0.913 |
| Kd | — |
| Compound | PG4 |
| Residue | . / 1670 |
| Chain | SF / AA |
| Non-redundant | False |
| Interacting RNA chains | A/AA |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | A/AA: rRNA |
| RNA family global | rRNA |
| Volume | 86.78 Å3 |
| Hydrophobicity | 0.012 |
| Hydrophilicity | 0.618 |
| Buriedness | 0.460 |
| Don/acc character | 3.158 |
| SiteScore | 1.072 |
| D Score | 1.014 |
| Kd | — |
| Compound | PG4 |
| Residue | . / 1642 |
| Chain | SH / BA |
| Non-redundant | True |
| Interacting RNA chains | BA/BA |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | BA/BA: rRNA |
| RNA family global | rRNA |
| Volume | 69.63 Å3 |
| Hydrophobicity | 0.017 |
| Hydrophilicity | 0.598 |
| Buriedness | 0.477 |
| Don/acc character | 3.834 |
| SiteScore | 1.088 |
| D Score | 1.031 |
| Kd | — |
| Compound | PG4 |
| Residue | . / 202 |
| Chain | RO / DS |
| Non-redundant | True |
| Interacting RNA chains | AD/DA |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | AD/DA: rRNA |
| RNA family global | rRNA |
| Volume | - |
| Hydrophobicity | - |
| Hydrophilicity | - |
| Buriedness | - |
| Don/acc character | - |
| SiteScore | - |
| D Score | - |
| Kd | — |
| Compound | PG4 |
| Residue | . / 3193 |
| Chain | RW / DA |
| Non-redundant | True |
| Interacting RNA chains | AD/DA |
| RNA environment detailled | protein, other |
| RNA environment global | RNA/Other |
| RNA family chains | AD/DA: rRNA |
| RNA family global | rRNA |
| Volume | 194.82 Å3 |
| Hydrophobicity | 0.229 |
| Hydrophilicity | 0.883 |
| Buriedness | 0.597 |
| Don/acc character | 1.126 |
| SiteScore | 0.952 |
| D Score | 0.996 |
| Kd | — |
| Compound | PG4 |
| Residue | . / 3216 |
| Chain | OX / DA |
| Non-redundant | True |
| Interacting RNA chains | AD/DA |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | AD/DA: rRNA |
| RNA family global | rRNA |
| Volume | 251.08 Å3 |
| Hydrophobicity | 0.284 |
| Hydrophilicity | 0.807 |
| Buriedness | 0.658 |
| Don/acc character | 1.594 |
| SiteScore | 0.910 |
| D Score | 0.741 |
| Kd | — |