Complex 5j7l
System information
| Experimental technique | X-ray |
| Experimental resolution | 3.00 |
| System mass | 4272.87 kDa |
| Deposition year | 2016 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Escherichia |
| RCSB PDB Entry | 5j7l |
| Reference | Cocozaki Alexis I., Altman Roger B., Huang Jian, Buurman Ed T., Kazmirski Steven L., Doig Peter, Prince D. Bryan, Blanchard Scott C., Cate Jamie H. D., Ferguson Andrew D.. . Resistance mutations generate divergent antibiotic susceptibility profiles against translation inhibitors Proceedings of the National Academy of Sciences |
| Equivalence Class |
NR_all_56726.171,
NR_all_83717.186
BGSU version: 4.49 |
| Compound | 1PE |
| Residue | . / 3185 |
| Chain | TW / DA |
| Non-redundant | True |
| Interacting RNA chains | AD/DA |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | AD/DA: rRNA |
| RNA family global | rRNA |
| Volume | 83.35 Å3 |
| Hydrophobicity | 0.178 |
| Hydrophilicity | 1.066 |
| Buriedness | 0.573 |
| Don/acc character | 1.445 |
| SiteScore | 0.623 |
| D Score | 0.560 |
| Kd | — |
| Compound | 1PE |
| Residue | . / 3202 |
| Chain | KX / DA |
| Non-redundant | True |
| Interacting RNA chains | AD/DA |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | AD/DA: rRNA |
| RNA family global | rRNA |
| Volume | 328.94 Å3 |
| Hydrophobicity | 0.331 |
| Hydrophilicity | 0.914 |
| Buriedness | 0.716 |
| Don/acc character | 2.871 |
| SiteScore | 1.088 |
| D Score | 0.946 |
| Kd | — |
| Compound | PG4 |
| Residue | . / 1670 |
| Chain | SF / AA |
| Non-redundant | False |
| Interacting RNA chains | A/AA |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | A/AA: rRNA |
| RNA family global | rRNA |
| Volume | - |
| Hydrophobicity | - |
| Hydrophilicity | - |
| Buriedness | - |
| Don/acc character | - |
| SiteScore | - |
| D Score | - |
| Kd | — |
| Compound | PG4 |
| Residue | . / 1642 |
| Chain | WH / BA |
| Non-redundant | True |
| Interacting RNA chains | BA/BA |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | BA/BA: rRNA |
| RNA family global | rRNA |
| Volume | 59.68 Å3 |
| Hydrophobicity | 0.018 |
| Hydrophilicity | 0.593 |
| Buriedness | 0.467 |
| Don/acc character | 3.372 |
| SiteScore | 1.081 |
| D Score | 1.027 |
| Kd | — |
| Compound | PG4 |
| Residue | . / 202 |
| Chain | AP / DS |
| Non-redundant | True |
| Interacting RNA chains | AD/DA |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | AD/DA: rRNA |
| RNA family global | rRNA |
| Volume | - |
| Hydrophobicity | - |
| Hydrophilicity | - |
| Buriedness | - |
| Don/acc character | - |
| SiteScore | - |
| D Score | - |
| Kd | — |
| Compound | PG4 |
| Residue | . / 3193 |
| Chain | BX / DA |
| Non-redundant | True |
| Interacting RNA chains | AD/DA |
| RNA environment detailled | protein, other |
| RNA environment global | RNA/Other |
| RNA family chains | AD/DA: rRNA |
| RNA family global | rRNA |
| Volume | 196.20 Å3 |
| Hydrophobicity | 0.266 |
| Hydrophilicity | 0.962 |
| Buriedness | 0.638 |
| Don/acc character | 1.086 |
| SiteScore | 1.091 |
| D Score | 0.966 |
| Kd | — |
| Compound | PG4 |
| Residue | . / 3216 |
| Chain | YX / DA |
| Non-redundant | True |
| Interacting RNA chains | AD/DA |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | AD/DA: rRNA |
| RNA family global | rRNA |
| Volume | 252.11 Å3 |
| Hydrophobicity | 0.251 |
| Hydrophilicity | 0.901 |
| Buriedness | 0.680 |
| Don/acc character | 0.590 |
| SiteScore | 0.890 |
| D Score | 0.702 |
| Kd | — |
| Compound | TAC |
| Residue | . / 1680 |
| Chain | CG / AA |
| Non-redundant | False |
| Interacting RNA chains | A/AA |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | A/AA: rRNA |
| RNA family global | rRNA |
| Volume | 206.83 Å3 |
| Hydrophobicity | 0.396 |
| Hydrophilicity | 1.019 |
| Buriedness | 0.738 |
| Don/acc character | 1.780 |
| SiteScore | 0.956 |
| D Score | 0.762 |
| Kd | — |
| Compound | TAC |
| Residue | . / 1681 |
| Chain | DG / AA |
| Non-redundant | True |
| Interacting RNA chains | A/AA |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | A/AA: rRNA |
| RNA family global | rRNA |
| Volume | 113.19 Å3 |
| Hydrophobicity | 0.094 |
| Hydrophilicity | 1.016 |
| Buriedness | 0.642 |
| Don/acc character | 1.974 |
| SiteScore | 0.554 |
| D Score | 0.464 |
| Kd | — |
| Compound | TAC |
| Residue | . / 1643 |
| Chain | XH / BA |
| Non-redundant | True |
| Interacting RNA chains | BA/BA |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | BA/BA: rRNA |
| RNA family global | rRNA |
| Volume | 205.11 Å3 |
| Hydrophobicity | 0.262 |
| Hydrophilicity | 1.016 |
| Buriedness | 0.717 |
| Don/acc character | 2.148 |
| SiteScore | 0.997 |
| D Score | 0.821 |
| Kd | — |
| Compound | TAC |
| Residue | . / 1644 |
| Chain | YH / BA |
| Non-redundant | True |
| Interacting RNA chains | BA/BA |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | BA/BA: rRNA |
| RNA family global | rRNA |
| Volume | 108.73 Å3 |
| Hydrophobicity | 0.067 |
| Hydrophilicity | 1.115 |
| Buriedness | 0.649 |
| Don/acc character | 2.544 |
| SiteScore | 0.562 |
| D Score | 0.446 |
| Kd | — |