HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 5ibb

System information

Experimental technique X-ray
Experimental resolution 2.96
System mass 4568.55 kDa
Deposition year 2016
Molecule type RNA/Protein
# RNA entities 5
Organism Thermus
RCSB PDB Entry 5ibb
Reference Rozov Alexey, Westhof Eric, Yusupov Marat, Yusupova Gulnara. . The ribosome prohibits the G•U wobble geometry at the first position of the codon–anticodon helix Nucleic Acids Research

Compound SPE
Residue . / 1733
Chain UKA / 1G
Non-redundant True
Interacting RNA chains DB/1G
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -

Compound SPE
Residue . / 3446
Chain KCB / 14
Non-redundant True
Interacting RNA chains CC/14
Volume 868.13 Å3
Hydrophobicity 0.068
Hydrophilicity 1.341
Buriedness 0.755
Don/acc character 2.159
SiteScore 1.038
D Score 0.956

Compound SPE
Residue . / 208
Chain TCB / 1J
Non-redundant True
Interacting RNA chains CC/14, DC/1J
Volume 410.57 Å3
Hydrophobicity 0.224
Hydrophilicity 1.029
Buriedness 0.726
Don/acc character 3.973
SiteScore 1.018
D Score 1.036