Complex 5gip
System information
| Experimental technique | X-ray |
| Experimental resolution | 3.13 |
| System mass | 407.00 kDa |
| Deposition year | 2016 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Saccharolobus |
| RCSB PDB Entry | 5gip |
| Reference | Yang Zuxiao, Lin Jinzhong, Ye Keqiong. . Box C/D guide RNAs recognize a maximum of 10 nt of substrates Proceedings of the National Academy of Sciences |
| Equivalence Class |
NR_all_83671.4
BGSU version: 4.49 |
| Compound | SAH |
| Residue | . / 301 |
| Chain | U / E |
| Non-redundant | True |
| Interacting RNA chains | G/G, I/I |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | G/G: unknown, I/I: unknown |
| RNA family global | unknown |
| Volume | 300.47 Å3 |
| Hydrophobicity | 1.351 |
| Hydrophilicity | 1.151 |
| Buriedness | 0.946 |
| Don/acc character | 0.667 |
| SiteScore | 1.166 |
| D Score | 1.133 |
| Kd | — |
| Compound | SAH |
| Residue | . / 301 |
| Chain | V / F |
| Non-redundant | False |
| Interacting RNA chains | J/J, H/H |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | H/H: unknown, J/J: unknown |
| RNA family global | unknown |
| Volume | 307.67 Å3 |
| Hydrophobicity | 0.861 |
| Hydrophilicity | 1.253 |
| Buriedness | 0.946 |
| Don/acc character | 0.995 |
| SiteScore | 1.166 |
| D Score | 1.099 |
| Kd | — |
| Compound | SAH |
| Residue | . / 301 |
| Chain | W / O |
| Non-redundant | False |
| Interacting RNA chains | Q/Q, S/S |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | Q/Q: unknown, S/S: unknown |
| RNA family global | unknown |
| Volume | 284.35 Å3 |
| Hydrophobicity | 1.019 |
| Hydrophilicity | 1.358 |
| Buriedness | 0.947 |
| Don/acc character | 0.512 |
| SiteScore | 1.167 |
| D Score | 1.065 |
| Kd | — |
| Compound | SAH |
| Residue | . / 301 |
| Chain | X / P |
| Non-redundant | False |
| Interacting RNA chains | R/R, T/T |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | R/R: unknown, T/T: unknown |
| RNA family global | unknown |
| Volume | 268.23 Å3 |
| Hydrophobicity | 0.892 |
| Hydrophilicity | 1.327 |
| Buriedness | 0.955 |
| Don/acc character | 0.718 |
| SiteScore | 1.172 |
| D Score | 1.080 |
| Kd | — |