Complex 5e6m
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | X-ray |
| Experimental resolution | 2.93 |
| System mass | 206.23 kDa |
| Deposition year | 2015 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Homo |
| RCSB PDB Entry | 5e6m |
| Reference | Qin Xiangjing, Deng Xiangyu, Chen Lei, Xie Wei. 2016. Crystal Structure of the Wild-Type Human GlyRS Bound with tRNAGly in a Productive Conformation Journal of Molecular Biology |
| Equivalence Class |
NR_all_06496.3
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | GAP |
| Residue | . / 701 |
| Chain | E / A |
| Non-redundant | True |
| Interacting RNA chains | D/E |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | D/E: tRNA |
| RNA family global | tRNA |
| Volume | 560.81 Å3 |
| Hydrophobicity | 0.724 |
| Hydrophilicity | 1.166 |
| Buriedness | 0.831 |
| Don/acc character | 0.717 |
| SiteScore | 1.089 |
| D Score | 1.058 |
| Kd | — |
| Compound | GAP |
| Residue | . / 701 |
| Chain | G / B |
| Non-redundant | True |
| Interacting RNA chains | C/C |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | C/C: tRNA |
| RNA family global | tRNA |
| Volume | 542.63 Å3 |
| Hydrophobicity | 0.999 |
| Hydrophilicity | 1.000 |
| Buriedness | 0.828 |
| Don/acc character | 0.511 |
| SiteScore | 1.095 |
| D Score | 1.111 |
| Kd | — |