Complex 5dgf
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | X-ray |
| Experimental resolution | 3.30 |
| System mass | 6286.47 kDa |
| Deposition year | 2015 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Saccharomyces |
| RCSB PDB Entry | 5dgf |
| Equivalence Class |
NR_all_90506.85
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | SPS |
| Residue | . / 3401 |
| Chain | NF / 1 |
| Non-redundant | True |
| Interacting RNA chains | JA/1 |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | JA/1: rRNA |
| RNA family global | rRNA |
| Volume | 542.63 Å3 |
| Hydrophobicity | 0.413 |
| Hydrophilicity | 1.340 |
| Buriedness | 0.739 |
| Don/acc character | 0.698 |
| SiteScore | 0.641 |
| D Score | 0.947 |
| Kd | — |
| Compound | SPS |
| Residue | . / 3401 |
| Chain | NG / B |
| Non-redundant | True |
| Interacting RNA chains | KD/5 |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | KD/5: rRNA |
| RNA family global | rRNA |
| Volume | 735.05 Å3 |
| Hydrophobicity | 0.413 |
| Hydrophilicity | 1.323 |
| Buriedness | 0.774 |
| Don/acc character | 0.975 |
| SiteScore | 1.201 |
| D Score | 0.973 |
| Kd | — |