HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 5cd1

System information

Experimental technique X-ray
Experimental resolution 3.60
System mass 225.01 kDa
Deposition year 2015
Molecule type RNA/Protein
# RNA entities 1
Organism Homo
RCSB PDB Entry 5cd1
Reference Finer-Moore Janet, Czudnochowski Nadine, O'Connell Joseph D., Wang Amy Liya, Stroud Robert M.. . Crystal Structure of the Human tRNA m1A58 Methyltransferase–tRNA3Lys Complex: Refolding of Substrate tRNA Allows Access to the Methylation Target Journal of Molecular Biology

Compound SAH
Residue . / 301
Chain G / A
Non-redundant True
Interacting RNA chains E/M
Volume 325.16 Å3
Hydrophobicity 1.080
Hydrophilicity 1.176
Buriedness 0.867
Don/acc character 0.925
SiteScore 1.113
D Score 1.077

Compound SAH
Residue . / 301
Chain H / D
Non-redundant True
Interacting RNA chains F/N
Volume 248.68 Å3
Hydrophobicity 0.867
Hydrophilicity 1.155
Buriedness 0.844
Don/acc character 0.656
SiteScore 1.097
D Score 1.070