Complex 5btp
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | X-ray |
| Experimental resolution | 2.82 |
| System mass | 49.40 kDa |
| Deposition year | 2015 |
| Molecule type | RNA |
| # RNA entities | 1 |
| Organism | N/A |
| RCSB PDB Entry | 5btp |
| Reference | Jones Christopher P, Ferré-D'Amaré Adrian R. 2015. Recognition of the bacterial alarmone ZMP through long-distance association of two RNA subdomains Nature Structural & Molecular Biology |
| Equivalence Class |
NR_all_72776.5
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | AMZ |
| Residue | . / 108 |
| Chain | J / B |
| Non-redundant | True |
| Interacting RNA chains | A/B |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | A/B: riboswitch |
| RNA family global | riboswitch |
| Volume | 153.66 Å3 |
| Hydrophobicity | 0.399 |
| Hydrophilicity | 0.947 |
| Buriedness | 0.705 |
| Don/acc character | 2.333 |
| SiteScore | 0.847 |
| D Score | 0.646 |
| Kd | 487nM |
| Compound | AMZ |
| Residue | . / 106 |
| Chain | Q / A |
| Non-redundant | True |
| Interacting RNA chains | B/A |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | B/A: riboswitch |
| RNA family global | riboswitch |
| Volume | 615.34 Å3 |
| Hydrophobicity | 0.120 |
| Hydrophilicity | 1.284 |
| Buriedness | 0.731 |
| Don/acc character | 1.282 |
| SiteScore | 1.172 |
| D Score | 0.960 |
| Kd | 487nM |