Complex 5bs3
System information
| Experimental technique | X-ray |
| Experimental resolution | 2.65 |
| System mass | 169.87 kDa |
| Deposition year | 2015 |
| Molecule type | RNA/DNA/Protein |
| # RNA entities | 1 |
| Organism | Staphylococcus |
| RCSB PDB Entry | 5bs3 |
| Reference | Singh Sheo B., Kaelin David E., Wu Jin, Miesel Lynn, Tan Christopher M., Black Todd, Nargund Ravi, Meinke Peter T., Olsen David B., Lagrutta Armando, Lu Jun, Patel Sangita, Rickert Keith W., Smith Robert F., Soisson Stephen, Sherer Edward, Joyce Leo A., Wei Changqing, Peng Xuanjia, Wang Xiu, Fukuda Hideyuki, Kishii Ryuta, Takei Masaya, Takano Hisashi, Shibasaki Mitsuhito, Yajima Masanobu, Nishimura Akinori, Shibata Takeshi, Fukuda Yasumichi. . Tricyclic 1,5-naphthyridinone oxabicyclooctane-linked novel bacterial topoisomerase inhibitors as broad-spectrum antibacterial agents-SAR of left-hand-side moiety (Part-2) Bioorganic & Medicinal Chemistry Letters |
| Compound | WCP |
| Residue | . / 101 |
| Chain | I / F |
| Non-redundant | True |
| Interacting RNA chains | C/E, D/F |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | C/E: RNA/DNA_hybrid, D/F: RNA/DNA_hybrid |
| RNA family global | RNA/DNA_hybrid |
| Volume | 189.68 Å3 |
| Hydrophobicity | 3.100 |
| Hydrophilicity | 0.797 |
| Buriedness | 0.858 |
| Don/acc character | 0.465 |
| SiteScore | 0.944 |
| D Score | 0.926 |
| Kd | — |