Complex 4yco
System information
| Experimental technique | X-ray |
| Experimental resolution | 2.10 |
| System mass | 182.94 kDa |
| Deposition year | 2015 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Escherichia |
| RCSB PDB Entry | 4yco |
| Reference | Byrne Robert T., Jenkins Huw T., Peters Daniel T., Whelan Fiona, Stowell James, Aziz Naveed, Kasatsky Pavel, Rodnina Marina V., Koonin Eugene V., Konevega Andrey L., Antson Alfred A.. . Major reorientation of tRNA substrates defines specificity of dihydrouridine synthases Proceedings of the National Academy of Sciences |
| Equivalence Class |
NR_all_19951.100
BGSU version: 4.48 |
| Compound | FMN |
| Residue | . / 401 |
| Chain | G / A |
| Non-redundant | True |
| Interacting RNA chains | D/D |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | D/D: unknown |
| RNA family global | unknown |
| Volume | 232.21 Å3 |
| Hydrophobicity | 0.443 |
| Hydrophilicity | 1.751 |
| Buriedness | 0.909 |
| Don/acc character | 0.542 |
| SiteScore | 1.141 |
| D Score | 0.914 |
| Kd | — |
| Compound | FMN |
| Residue | . / 402 |
| Chain | I / B |
| Non-redundant | False |
| Interacting RNA chains | E/E |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | E/E: unknown |
| RNA family global | unknown |
| Volume | 350.89 Å3 |
| Hydrophobicity | 0.373 |
| Hydrophilicity | 1.617 |
| Buriedness | 0.907 |
| Don/acc character | 0.555 |
| SiteScore | 1.140 |
| D Score | 0.957 |
| Kd | — |
| Compound | FMN |
| Residue | . / 401 |
| Chain | J / C |
| Non-redundant | False |
| Interacting RNA chains | F/F |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | F/F: unknown |
| RNA family global | unknown |
| Volume | 483.63 Å3 |
| Hydrophobicity | 0.297 |
| Hydrophilicity | 1.671 |
| Buriedness | 0.873 |
| Don/acc character | 0.780 |
| SiteScore | 1.117 |
| D Score | 0.919 |
| Kd | — |