Complex 4ybb
System information
| Experimental technique | X-ray |
| Experimental resolution | 2.10 |
| System mass | 4270.48 kDa |
| Deposition year | 2015 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Escherichia |
| RCSB PDB Entry | 4ybb |
| Reference | Noeske Jonas, Wasserman Michael R, Terry Daniel S, Altman Roger B, Blanchard Scott C, Cate Jamie H D. . High-resolution structure of the Escherichia coli ribosome Nature Structural & Molecular Biology |
| Compound | 1PE |
| Residue | . / 3185 |
| Chain | YU / DA |
| Non-redundant | True |
| Interacting RNA chains | VB/DA |
| Volume | 86.78 Å3 |
| Hydrophobicity | 0.145 |
| Hydrophilicity | 1.129 |
| Buriedness | 0.586 |
| Don/acc character | 1.268 |
| SiteScore | 0.655 |
| D Score | 0.578 |
| Compound | 1PE |
| Residue | . / 3203 |
| Chain | QV / DA |
| Non-redundant | True |
| Interacting RNA chains | VB/DA |
| Volume | 324.14 Å3 |
| Hydrophobicity | 0.395 |
| Hydrophilicity | 0.855 |
| Buriedness | 0.718 |
| Don/acc character | 3.136 |
| SiteScore | 1.052 |
| D Score | 0.904 |
| Compound | PG4 |
| Residue | . / 1670 |
| Chain | SF / AA |
| Non-redundant | True |
| Interacting RNA chains | A/AA |
| Volume | 102.90 Å3 |
| Hydrophobicity | 0.025 |
| Hydrophilicity | 0.628 |
| Buriedness | 0.480 |
| Don/acc character | 3.059 |
| SiteScore | 1.084 |
| D Score | 1.023 |
| Compound | PG4 |
| Residue | . / 1642 |
| Chain | RH / BA |
| Non-redundant | True |
| Interacting RNA chains | V/BA |
| Volume | 58.65 Å3 |
| Hydrophobicity | 0.026 |
| Hydrophilicity | 0.600 |
| Buriedness | 0.492 |
| Don/acc character | 3.649 |
| SiteScore | 1.059 |
| D Score | 0.991 |
| Compound | PG4 |
| Residue | . / 3193 |
| Chain | GV / DA |
| Non-redundant | True |
| Interacting RNA chains | VB/DA |
| Volume | 156.07 Å3 |
| Hydrophobicity | 0.296 |
| Hydrophilicity | 0.899 |
| Buriedness | 0.614 |
| Don/acc character | 0.931 |
| SiteScore | 0.960 |
| D Score | 0.809 |
| Compound | PG4 |
| Residue | . / 3217 |
| Chain | EW / DA |
| Non-redundant | True |
| Interacting RNA chains | VB/DA |
| Volume | 361.87 Å3 |
| Hydrophobicity | 0.223 |
| Hydrophilicity | 0.938 |
| Buriedness | 0.663 |
| Don/acc character | 1.410 |
| SiteScore | 1.027 |
| D Score | 0.878 |
| Compound | PG4 |
| Residue | . / 202 |
| Chain | QX / DS |
| Non-redundant | True |
| Interacting RNA chains | VB/DA |
| Volume | - |
| Hydrophobicity | - |
| Hydrophilicity | - |
| Buriedness | - |
| Don/acc character | - |
| SiteScore | - |
| D Score | - |