HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 4ybb

System information

Experimental technique X-ray
Experimental resolution 2.10
System mass 4270.48 kDa
Deposition year 2015
Molecule type RNA/Protein
# RNA entities 3
Organism Escherichia
RCSB PDB Entry 4ybb
Reference Noeske Jonas, Wasserman Michael R, Terry Daniel S, Altman Roger B, Blanchard Scott C, Cate Jamie H D. . High-resolution structure of the Escherichia coli ribosome Nature Structural & Molecular Biology

Compound 1PE
Residue . / 3203
Chain QV / DA
Non-redundant True
Interacting RNA chains VB/DA
Volume 321.05 Å3
Hydrophobicity 0.294
Hydrophilicity 1.159
Buriedness 0.717
Don/acc character 2.346
SiteScore 0.947
D Score 0.909

Compound PG4
Residue . / 1670
Chain SF / AA
Non-redundant False
Interacting RNA chains A/AA
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -

Compound PG4
Residue . / 1642
Chain RH / BA
Non-redundant True
Interacting RNA chains V/BA
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -

Compound PG4
Residue . / 3217
Chain EW / DA
Non-redundant True
Interacting RNA chains VB/DA
Volume 359.81 Å3
Hydrophobicity 0.285
Hydrophilicity 0.940
Buriedness 0.662
Don/acc character 1.331
SiteScore 0.898
D Score 0.905