Complex 4yb1
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | X-ray |
| Experimental resolution | 2.08 |
| System mass | 40.85 kDa |
| Deposition year | 2015 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Vibrio |
| RCSB PDB Entry | 4yb1 |
| Reference | Ren Aiming, Wang Xin C., Kellenberger Colleen A., Rajashankar Kanagalaghatta R., Jones Roger A., Hammond Ming C., Patel Dinshaw J.. 2015. Structural Basis for Molecular Discrimination by a 3′,3′-cGAMP Sensing Riboswitch Cell Reports |
| Equivalence Class |
NR_all_12260.5
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | 4BW |
| Residue | . / 102 |
| Chain | D / R |
| Non-redundant | True |
| Interacting RNA chains | A/R |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | A/R: riboswitch |
| RNA family global | riboswitch |
| Volume | 359.46 Å3 |
| Hydrophobicity | 0.771 |
| Hydrophilicity | 0.989 |
| Buriedness | 0.711 |
| Don/acc character | 1.127 |
| SiteScore | 1.169 |
| D Score | 1.044 |
| Kd | — |