Complex 4www
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | X-ray |
| Experimental resolution | 3.10 |
| System mass | 4237.89 kDa |
| Deposition year | 2014 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Escherichia |
| RCSB PDB Entry | 4www |
| Reference | Llano-Sotelo Beatriz, Dunkle Jack, Klepacki Dorota, Zhang Wen, Fernandes Prabhavathi, Cate Jamie H. D., Mankin Alexander S.. 2010. Binding and Action of CEM-101, a New Fluoroketolide Antibiotic That Inhibits Protein Synthesis Antimicrobial Agents and Chemotherapy |
| Equivalence Class |
NR_all_83717.187
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | EM1 |
| Residue | . / 3135 |
| Chain | EI / RA |
| Non-redundant | True |
| Interacting RNA chains | A/RA |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | A/RA: rRNA |
| RNA family global | rRNA |
| Volume | 256.91 Å3 |
| Hydrophobicity | 0.120 |
| Hydrophilicity | 0.956 |
| Buriedness | 0.626 |
| Don/acc character | 0.834 |
| SiteScore | 1.012 |
| D Score | 0.931 |
| Kd | — |