Complex 4v8u
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | X-ray |
| Experimental resolution | 3.70 |
| System mass | 4655.34 kDa |
| Deposition year | 2012 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Thermus |
| RCSB PDB Entry | 4v8u |
| Reference | Feng Shu, Chen Yun, Gao Yong-Gui. 2013. Crystal Structure of 70S Ribosome with Both Cognate tRNAs in the E and P Sites Representing an Authentic Elongation Complex PLoS ONE |
| Equivalence Class |
NR_all_97519.80
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | FUA |
| Residue | . / 701 |
| Chain | MD / AY |
| Non-redundant | True |
| Interacting RNA chains | JA/BA |
| RNA environment detailled | protein, ion, other |
| RNA environment global | RNA/Other |
| RNA family chains | JA/BA: rRNA |
| RNA family global | rRNA |
| Volume | 344.37 Å3 |
| Hydrophobicity | 0.566 |
| Hydrophilicity | 1.030 |
| Buriedness | 0.717 |
| Don/acc character | 1.206 |
| SiteScore | 1.015 |
| D Score | 1.035 |
| Kd | — |
| Compound | FUA |
| Residue | . / 701 |
| Chain | TD / CY |
| Non-redundant | True |
| Interacting RNA chains | OC/DA |
| RNA environment detailled | protein, ion, other |
| RNA environment global | RNA/Other |
| RNA family chains | OC/DA: rRNA |
| RNA family global | rRNA |
| Volume | 359.81 Å3 |
| Hydrophobicity | 0.262 |
| Hydrophilicity | 1.274 |
| Buriedness | 0.691 |
| Don/acc character | 0.824 |
| SiteScore | 0.995 |
| D Score | 0.939 |
| Kd | — |