Complex 4v56
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | X-ray |
| Experimental resolution | 3.93 |
| System mass | 4295.84 kDa |
| Deposition year | 2007 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Escherichia |
| RCSB PDB Entry | 4v56 |
| Reference | Borovinskaya Maria A., Shoji Shinichiro, Holton James M., Fredrick Kurt, Cate Jamie H. D.. 2007. A Steric Block in Translation Caused by the Antibiotic Spectinomycin ACS Chemical Biology |
| Equivalence Class |
NR_all_56726.172
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | SCM |
| Residue | . / 1661 |
| Chain | IF / AA |
| Non-redundant | True |
| Interacting RNA chains | A/AA |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | A/AA: rRNA |
| RNA family global | rRNA |
| Volume | 483.63 Å3 |
| Hydrophobicity | 0.121 |
| Hydrophilicity | 1.198 |
| Buriedness | 0.747 |
| Don/acc character | 1.891 |
| SiteScore | 1.183 |
| D Score | 0.998 |
| Kd | — |
| Compound | SCM |
| Residue | . / 1659 |
| Chain | WL / CA |
| Non-redundant | True |
| Interacting RNA chains | AB/CA |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | AB/CA: rRNA |
| RNA family global | rRNA |
| Volume | 467.51 Å3 |
| Hydrophobicity | 0.091 |
| Hydrophilicity | 1.256 |
| Buriedness | 0.716 |
| Don/acc character | 1.616 |
| SiteScore | 1.162 |
| D Score | 0.960 |
| Kd | — |