HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 4u4n

System information

Experimental technique X-ray
Experimental resolution 3.10
System mass 6631.84 kDa
Deposition year 2014
Molecule type RNA/Protein
# RNA entities 1
Organism Saccharomyces
RCSB PDB Entry 4u4n
Reference Garreau de Loubresse Nicolas, Prokhorova Irina, Holtkamp Wolf, Rodnina Marina V., Yusupova Gulnara, Yusupov Marat. . Structural basis for the inhibition of the eukaryotic ribosome Nature
Equivalence Class NR_all_03510.74
BGSU version: 4.48

Compound EDE
Residue . / 2180
Chain ZP / 2
Non-redundant True
Interacting RNA chains A/2
RNA environment detailled protein, ion
RNA environment global RNA/Protein
RNA family chains A/2: rRNA
RNA family global rRNA
Volume 707.61 Å3
Hydrophobicity 0.222
Hydrophilicity 1.294
Buriedness 0.722
Don/acc character 1.782
SiteScore 1.166
D Score 0.951
Kd

Compound EDE
Residue . / 2202
Chain PMB / 6
Non-redundant True
Interacting RNA chains BC/6
RNA environment detailled protein, ion
RNA environment global RNA/Protein
RNA family chains BC/6: rRNA
RNA family global rRNA
Volume 617.40 Å3
Hydrophobicity 0.122
Hydrophilicity 1.352
Buriedness 0.738
Don/acc character 2.080
SiteScore 1.177
D Score 0.942
Kd