Complex 4ts0
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | X-ray |
| Experimental resolution | 2.80 |
| System mass | 31.77 kDa |
| Deposition year | 2014 |
| Molecule type | RNA |
| # RNA entities | 1 |
| Organism | N/A |
| RCSB PDB Entry | 4ts0 |
| Reference | Warner Katherine Deigan, Chen Michael C, Song Wenjiao, Strack Rita L, Thorn Andrea, Jaffrey Samie R, Ferré-D'Amaré Adrian R. 2014. Structural basis for activity of highly efficient RNA mimics of green fluorescent protein Nature Structural & Molecular Biology |
| Equivalence Class |
NR_all_80828.3
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | 38E |
| Residue | . / 206 |
| Chain | R / Y |
| Non-redundant | True |
| Interacting RNA chains | B/Y, A/X |
| RNA environment detailled | ion, other |
| RNA environment global | RNA/Other |
| RNA family chains | A/X: aptamer_rna, B/Y: aptamer_rna |
| RNA family global | aptamer_rna |
| Volume | 337.51 Å3 |
| Hydrophobicity | 0.713 |
| Hydrophilicity | 0.901 |
| Buriedness | 0.692 |
| Don/acc character | 2.348 |
| SiteScore | 1.139 |
| D Score | 1.018 |
| Kd | 530nM |