Complex 3jb7
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | Electron Microscopy |
| Experimental resolution | 4.00 |
| System mass | 213.00 kDa |
| Deposition year | 2015 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Cypovirus |
| RCSB PDB Entry | 3jb7 |
| Reference | Zhang Xing, Ding Ke, Yu Xuekui, Chang Winston, Sun Jingchen, Hong Zhou Z.. 2015. In situ structures of the segmented genome and RNA polymerase complex inside a dsRNA virus Nature |
| Equivalence Class |
NR_all_37313.1
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | CTP |
| Residue | . / 1302 |
| Chain | H / A |
| Non-redundant | False |
| Interacting RNA chains | E/m, D/t |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | D/t: unknown, E/m: unknown |
| RNA family global | unknown |
| Volume | 673.31 Å3 |
| Hydrophobicity | 0.432 |
| Hydrophilicity | 1.519 |
| Buriedness | 0.863 |
| Don/acc character | 0.736 |
| SiteScore | 1.111 |
| D Score | 0.963 |
| Kd | — |