HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 3iwn

System information

Experimental technique X-ray
Experimental resolution 3.20
System mass 82.66 kDa
Deposition year 2009
Molecule type RNA/Protein
# RNA entities 1
Organism Vibrio
RCSB PDB Entry 3iwn
Reference Kulshina Nadia, Baird Nathan J, Ferré-D'Amaré Adrian R. . Recognition of the bacterial second messenger cyclic diguanylate by its cognate riboswitch Nature Structural & Molecular Biology
Equivalence Class NR_all_25458.3
BGSU version: 4.48

Compound C2E
Residue . / 501
Chain E / A
Non-redundant True
Interacting RNA chains A/A
RNA environment detailled RNA-only
RNA environment global RNA
RNA family chains A/A: riboswitch
RNA family global riboswitch
Volume 405.77 Å3
Hydrophobicity 0.577
Hydrophilicity 1.022
Buriedness 0.686
Don/acc character 1.614
SiteScore 1.145
D Score 1.018
Kd

Compound C2E
Residue . / 601
Chain F / B
Non-redundant False
Interacting RNA chains B/B
RNA environment detailled RNA-only
RNA environment global RNA
RNA family chains B/B: riboswitch
RNA family global riboswitch
Volume 655.82 Å3
Hydrophobicity 0.402
Hydrophilicity 1.118
Buriedness 0.706
Don/acc character 1.058
SiteScore 1.155
D Score 0.999
Kd