Complex 3g6e
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | X-ray |
| Experimental resolution | 2.70 |
| System mass | 1461.63 kDa |
| Deposition year | 2009 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Haloarcula |
| RCSB PDB Entry | 3g6e |
| Reference | Gürel Güliz, Blaha Gregor, Moore Peter B., Steitz Thomas A.. 2009. U2504 Determines the Species Specificity of the A-Site Cleft Antibiotics: Journal of Molecular Biology |
| Equivalence Class |
NR_all_26150.5
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | HMT |
| Residue | . / 9101 |
| Chain | BK / 0 |
| Non-redundant | True |
| Interacting RNA chains | A/0 |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | A/0: rRNA |
| RNA family global | rRNA |
| Volume | 753.23 Å3 |
| Hydrophobicity | 0.352 |
| Hydrophilicity | 1.434 |
| Buriedness | 0.783 |
| Don/acc character | 1.328 |
| SiteScore | 1.207 |
| D Score | 0.942 |
| Kd | — |