Complex 3dvv
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | X-ray |
| Experimental resolution | 2.00 |
| System mass | 15.90 kDa |
| Deposition year | 2008 |
| Molecule type | RNA |
| # RNA entities | 1 |
| Organism | N/A |
| RCSB PDB Entry | 3dvv |
| Equivalence Class |
NR_all_30081.2
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | RIO |
| Residue | . / 27 |
| Chain | F / A |
| Non-redundant | False |
| Interacting RNA chains | A/A, B/B |
| RNA environment detailled | other |
| RNA environment global | RNA/Other |
| RNA family chains | A/A: TAR_rna, B/B: TAR_rna |
| RNA family global | TAR_rna |
| Volume | 546.74 Å3 |
| Hydrophobicity | 0.042 |
| Hydrophilicity | 1.222 |
| Buriedness | 0.678 |
| Don/acc character | 1.476 |
| SiteScore | 1.136 |
| D Score | 0.948 |
| Kd | — |
| Compound | RIO |
| Residue | . / 26 |
| Chain | I / B |
| Non-redundant | False |
| Interacting RNA chains | A/A, B/B |
| RNA environment detailled | ion, other |
| RNA environment global | RNA/Other |
| RNA family chains | A/A: TAR_rna, B/B: TAR_rna |
| RNA family global | TAR_rna |
| Volume | 463.39 Å3 |
| Hydrophobicity | 0.053 |
| Hydrophilicity | 1.365 |
| Buriedness | 0.705 |
| Don/acc character | 1.379 |
| SiteScore | 1.155 |
| D Score | 0.918 |
| Kd | — |