Complex 3d2v
System information
| Experimental technique | X-ray |
| Experimental resolution | 2.00 |
| System mass | 51.00 kDa |
| Deposition year | 2008 |
| Molecule type | RNA |
| # RNA entities | 1 |
| Organism | Arabidopsis |
| RCSB PDB Entry | 3d2v |
| Reference | Thore Stéphane, Frick Christian, Ban Nenad. . Structural Basis of Thiamine Pyrophosphate Analogues Binding to the Eukaryotic Riboswitch Journal of the American Chemical Society |
| Equivalence Class |
NR_all_27756.3
BGSU version: 4.48 |
| Compound | PYI |
| Residue | . / 84 |
| Chain | I / A |
| Non-redundant | True |
| Interacting RNA chains | A/A |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | A/A: riboswitch |
| RNA family global | riboswitch |
| Volume | 417.77 Å3 |
| Hydrophobicity | 0.781 |
| Hydrophilicity | 0.939 |
| Buriedness | 0.782 |
| Don/acc character | 1.959 |
| SiteScore | 1.088 |
| D Score | 0.927 |
| Kd | — |
| Compound | PYI |
| Residue | . / 82 |
| Chain | N / B |
| Non-redundant | False |
| Interacting RNA chains | B/B |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | B/B: riboswitch |
| RNA family global | riboswitch |
| Volume | 752.20 Å3 |
| Hydrophobicity | 0.332 |
| Hydrophilicity | 1.156 |
| Buriedness | 0.736 |
| Don/acc character | 1.492 |
| SiteScore | 1.175 |
| D Score | 1.005 |
| Kd | — |