HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 3d2v

System information

Experimental technique X-ray
Experimental resolution 2.00
System mass 51.00 kDa
Deposition year 2008
Molecule type RNA
# RNA entities 1
Organism Arabidopsis
RCSB PDB Entry 3d2v
Reference Thore Stéphane, Frick Christian, Ban Nenad. . Structural Basis of Thiamine Pyrophosphate Analogues Binding to the Eukaryotic Riboswitch Journal of the American Chemical Society

Compound PYI
Residue . / 84
Chain I / A
Non-redundant True
Interacting RNA chains A/A
Volume 823.89 Å3
Hydrophobicity 0.330
Hydrophilicity 1.355
Buriedness 0.778
Don/acc character 0.951
SiteScore 1.053
D Score 0.965

Compound PYI
Residue . / 82
Chain N / B
Non-redundant False
Interacting RNA chains B/B
Volume 651.70 Å3
Hydrophobicity 0.371
Hydrophilicity 1.328
Buriedness 0.764
Don/acc character 0.793
SiteScore 1.044
D Score 0.966