HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 3d2v

System information

Experimental technique X-ray
Experimental resolution 2.00
System mass 51.00 kDa
Deposition year 2008
Molecule type RNA
# RNA entities 1
Organism Arabidopsis
RCSB PDB Entry 3d2v
Reference Thore Stéphane, Frick Christian, Ban Nenad. . Structural Basis of Thiamine Pyrophosphate Analogues Binding to the Eukaryotic Riboswitch Journal of the American Chemical Society

Compound PYI
Residue . / 84
Chain I / A
Non-redundant False
Interacting RNA chains A/A
Volume 844.47 Å3
Hydrophobicity 0.395
Hydrophilicity 1.224
Buriedness 0.770
Don/acc character 1.649
SiteScore 1.048
D Score 1.003

Compound PYI
Residue . / 82
Chain N / B
Non-redundant True
Interacting RNA chains B/B
Volume 795.07 Å3
Hydrophobicity 0.315
Hydrophilicity 1.212
Buriedness 0.750
Don/acc character 1.423
SiteScore 1.035
D Score 0.995