Complex 3c5d
System information
| Experimental technique | X-ray |
| Experimental resolution | 1.80 |
| System mass | 16.53 kDa |
| Deposition year | 2008 |
| Molecule type | RNA/DNA |
| # RNA entities | 1 |
| Organism | N/A |
| RCSB PDB Entry | 3c5d |
| Reference | Freisz Séverine, Lang Kathrin, Micura Ronald, Dumas Philippe, Ennifar Eric. . Binding of Aminoglycoside Antibiotics to the Duplex Form of the HIV‐1 Genomic RNA Dimerization Initiation Site Angewandte Chemie International Edition |
| Compound | LIV |
| Residue | . / 24 |
| Chain | D / B |
| Non-redundant | True |
| Interacting RNA chains | B/B, A/A |
| RNA environment detailled | other |
| RNA environment global | RNA/Other |
| RNA family chains | A/A: TAR_rna, B/B: TAR_rna |
| RNA family global | TAR_rna |
| Volume | 361.87 Å3 |
| Hydrophobicity | 0.071 |
| Hydrophilicity | 1.171 |
| Buriedness | 0.676 |
| Don/acc character | 1.486 |
| SiteScore | 1.128 |
| D Score | 0.954 |
| Kd | — |
| Compound | LIV |
| Residue | . / 25 |
| Chain | E / B |
| Non-redundant | False |
| Interacting RNA chains | B/B, A/A |
| RNA environment detailled | other |
| RNA environment global | RNA/Other |
| RNA family chains | A/A: TAR_rna, B/B: TAR_rna |
| RNA family global | TAR_rna |
| Volume | 430.47 Å3 |
| Hydrophobicity | 0.052 |
| Hydrophilicity | 1.106 |
| Buriedness | 0.675 |
| Don/acc character | 1.836 |
| SiteScore | 1.134 |
| D Score | 0.984 |
| Kd | — |