Complex 3b0u
System information
| Experimental technique | X-ray |
| Experimental resolution | 1.95 |
| System mass | 82.69 kDa |
| Deposition year | 2011 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Thermus |
| RCSB PDB Entry | 3b0u |
| Reference | Yu Futao, Tanaka Yoshikazu, Yamashita Keitaro, Suzuki Takeo, Nakamura Akiyoshi, Hirano Nagisa, Suzuki Tsutomu, Yao Min, Tanaka Isao. . Molecular basis of dihydrouridine formation on tRNA Proceedings of the National Academy of Sciences |
| Equivalence Class |
NR_all_35987.3
BGSU version: 4.48 |
| Compound | FMN |
| Residue | . / 400 |
| Chain | E / X |
| Non-redundant | True |
| Interacting RNA chains | A/A |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | A/A: tRNA |
| RNA family global | tRNA |
| Volume | 264.80 Å3 |
| Hydrophobicity | 0.236 |
| Hydrophilicity | 1.694 |
| Buriedness | 0.824 |
| Don/acc character | 0.530 |
| SiteScore | 1.084 |
| D Score | 0.882 |
| Kd | — |
| Compound | FMN |
| Residue | . / 400 |
| Chain | F / Y |
| Non-redundant | True |
| Interacting RNA chains | B/B |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | B/B: tRNA |
| RNA family global | tRNA |
| Volume | 250.73 Å3 |
| Hydrophobicity | 0.209 |
| Hydrophilicity | 1.505 |
| Buriedness | 0.753 |
| Don/acc character | 0.368 |
| SiteScore | 1.037 |
| D Score | 0.901 |
| Kd | — |