Complex 3avy
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | X-ray |
| Experimental resolution | 2.62 |
| System mass | 151.85 kDa |
| Deposition year | 2011 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | N/A |
| RCSB PDB Entry | 3avy |
| Reference | Takeshita Daijiro, Tomita Kozo. 2012. Molecular basis for RNA polymerization by Qβ replicase Nature Structural & Molecular Biology |
| Equivalence Class |
NR_all_41068.1,
NR_all_58576.1
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | CH1 |
| Residue | . / 2501 |
| Chain | D / A |
| Non-redundant | False |
| Interacting RNA chains | B/G, C/T |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | B/G: unknown, C/T: unknown |
| RNA family global | unknown |
| Volume | 497.35 Å3 |
| Hydrophobicity | 0.412 |
| Hydrophilicity | 1.465 |
| Buriedness | 0.832 |
| Don/acc character | 0.584 |
| SiteScore | 1.089 |
| D Score | 0.961 |
| Kd | — |