HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 2qwy

System information

Experimental technique X-ray
Experimental resolution 2.80
System mass 52.52 kDa
Deposition year 2007
Molecule type RNA
# RNA entities 1
Organism N/A
RCSB PDB Entry 2qwy
Reference Gilbert Sunny D, Rambo Robert P, Van Tyne Daria, Batey Robert T. . Structure of the SAM-II riboswitch bound to S-adenosylmethionine Nature Structural & Molecular Biology

Compound SAM
Residue . / 100
Chain H / A
Non-redundant True
Interacting RNA chains A/A
RNA environment detailled RNA-only
RNA environment global RNA
RNA family chains A/A: riboswitch
RNA family global riboswitch
Volume 442.47 Å3
Hydrophobicity 0.271
Hydrophilicity 0.894
Buriedness 0.663
Don/acc character 2.151
SiteScore 1.148
D Score 1.037
Kd

Compound SAM
Residue . / 300
Chain K / B
Non-redundant False
Interacting RNA chains B/B
RNA environment detailled RNA-only
RNA environment global RNA
RNA family chains B/B: riboswitch
RNA family global riboswitch
Volume 386.56 Å3
Hydrophobicity 0.308
Hydrophilicity 0.871
Buriedness 0.622
Don/acc character 1.711
SiteScore 1.128
D Score 1.024
Kd

Compound SAM
Residue . / 500
Chain O / C
Non-redundant False
Interacting RNA chains C/C
RNA environment detailled RNA-only
RNA environment global RNA
RNA family chains C/C: riboswitch
RNA family global riboswitch
Volume 397.54 Å3
Hydrophobicity 0.346
Hydrophilicity 0.852
Buriedness 0.670
Don/acc character 2.113
SiteScore 1.118
D Score 1.001
Kd