Complex 2lwk
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | Solution NMR |
| Experimental resolution | N/A |
| System mass | 10.55 kDa |
| Deposition year | 2012 |
| Molecule type | RNA |
| # RNA entities | 1 |
| Organism | N/A |
| RCSB PDB Entry | 2lwk |
| Reference | Lee Mi-Kyung, Bottini Angel, Kim Meehyein, Bardaro Michael F., Zhang Ziming, Pellecchia Maurizio, Choi Byong-Seok, Varani Gabriele. 2014. A novel small-molecule binds to the influenza A virus RNA promoter and inhibits viral replication Chem. Commun. |
| Equivalence Class |
NR_all_42154.1
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | 0EC |
| Residue | . / 101 |
| Chain | B / A |
| Non-redundant | True |
| Interacting RNA chains | A/A |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | A/A: unknown |
| RNA family global | unknown |
| Volume | 116.62 Å3 |
| Hydrophobicity | 0.018 |
| Hydrophilicity | 0.576 |
| Buriedness | 0.472 |
| Don/acc character | 2.645 |
| SiteScore | 1.088 |
| D Score | 1.035 |
| Kd | 50.5uM |