Complex 2hhh
System information
| Experimental technique | X-ray |
| Experimental resolution | 3.35 |
| System mass | 784.44 kDa |
| Deposition year | 2006 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Thermus |
| RCSB PDB Entry | 2hhh |
| Reference | Schluenzen Frank, Takemoto Chie, Wilson Daniel N, Kaminishi Tatsuya, Harms Joerg M, Hanawa-Suetsugu Kyoko, Szaflarski Witold, Kawazoe Masahito, Shirouzu Mikako, Nierhaus Knud H, Yokoyama Shigeyuki, Fucini Paola. . The antibiotic kasugamycin mimics mRNA nucleotides to destabilize tRNA binding and inhibit canonical translation initiation Nature Structural & Molecular Biology |
| Compound | KSG |
| Residue | . / 1523 |
| Chain | V / A |
| Non-redundant | True |
| Interacting RNA chains | A/A |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | A/A: rRNA |
| RNA family global | rRNA |
| Volume | 404.74 Å3 |
| Hydrophobicity | 0.070 |
| Hydrophilicity | 1.377 |
| Buriedness | 0.712 |
| Don/acc character | 1.801 |
| SiteScore | 1.159 |
| D Score | 0.918 |
| Kd | — |
| Compound | KSG |
| Residue | . / 1524 |
| Chain | W / A |
| Non-redundant | True |
| Interacting RNA chains | A/A |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | A/A: rRNA |
| RNA family global | rRNA |
| Volume | 116.62 Å3 |
| Hydrophobicity | 0.233 |
| Hydrophilicity | 0.936 |
| Buriedness | 0.653 |
| Don/acc character | 2.105 |
| SiteScore | 0.822 |
| D Score | 0.618 |
| Kd | — |