HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 2g5k

System information

Experimental technique X-ray
Experimental resolution 2.80
System mass 16.16 kDa
Deposition year 2006
Molecule type RNA
# RNA entities 1
Organism N/A
RCSB PDB Entry 2g5k
Reference Kondo Jiro, François Boris, Urzhumtsev Alexandre, Westhof Eric. . Crystal Structure of the Homo sapiens Cytoplasmic Ribosomal Decoding Site Complexed with Apramycin Angewandte Chemie International Edition

Compound AM2
Residue . / 102
Chain C / A
Non-redundant True
Interacting RNA chains A/A, B/B
Volume 258.97 Å3
Hydrophobicity 0.084
Hydrophilicity 0.923
Buriedness 0.638
Don/acc character 2.137
SiteScore 0.943
D Score 0.779

Compound AM2
Residue . / 101
Chain F / B
Non-redundant True
Interacting RNA chains A/A, B/B
Volume 270.28 Å3
Hydrophobicity 0.060
Hydrophilicity 0.871
Buriedness 0.626
Don/acc character 2.802
SiteScore 0.946
D Score 0.789