HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 2g5k

System information

Experimental technique X-ray
Experimental resolution 2.80
System mass 16.16 kDa
Deposition year 2006
Molecule type RNA
# RNA entities 1
Organism N/A
RCSB PDB Entry 2g5k
Reference Kondo Jiro, François Boris, Urzhumtsev Alexandre, Westhof Eric. . Crystal Structure of the Homo sapiens Cytoplasmic Ribosomal Decoding Site Complexed with Apramycin Angewandte Chemie International Edition

Compound AM2
Residue . / 102
Chain C / A
Non-redundant True
Interacting RNA chains B/B, A/A
Volume 259.99 Å3
Hydrophobicity 0.061
Hydrophilicity 0.921
Buriedness 0.639
Don/acc character 2.478
SiteScore 0.809
D Score 0.799

Compound AM2
Residue . / 101
Chain F / B
Non-redundant True
Interacting RNA chains B/B, A/A
Volume 268.91 Å3
Hydrophobicity 0.063
Hydrophilicity 0.896
Buriedness 0.627
Don/acc character 2.813
SiteScore 0.801
D Score 0.794