Complex 1uts
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | Solution NMR |
| Experimental resolution | N/A |
| System mass | 9.72 kDa |
| Deposition year | 2003 |
| Molecule type | RNA |
| # RNA entities | 1 |
| Organism | Lentivirus |
| RCSB PDB Entry | 1uts |
| Reference | Murchie Alastair I.H., Davis Ben, Isel Catherine, Afshar Mohammad, Drysdale Martin J., Bower Justin, Potter Andrew J., Starkey Ian D., Swarbrick Terry M., Mirza Shabana, Prescott Catherine D., Vaglio Philippe, Aboul-ela Fareed, Karn Jonathan. 2004. Structure-based Drug Design Targeting an Inactive RNA Conformation: Exploiting the Flexibility of HIV-1 TAR RNA Journal of Molecular Biology |
| Equivalence Class |
NR_all_55338.1
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | P13 |
| Residue | . / 1046 |
| Chain | B / B |
| Non-redundant | True |
| Interacting RNA chains | A/B |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | A/B: TAR_rna |
| RNA family global | TAR_rna |
| Volume | 92.95 Å3 |
| Hydrophobicity | 0.205 |
| Hydrophilicity | 0.870 |
| Buriedness | 0.549 |
| Don/acc character | 3.675 |
| SiteScore | 0.796 |
| D Score | 0.617 |
| Kd | — |